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bioRxiv · 10.1101/2021.05.18.444604

UMGAP: the Unipept MetaGenomics Analysis Pipeline

Van der Jeugt, F.·Maertens, R.·Steyaert, A.·Verschaffelt, P.·De Tender, C.·Dawyndt, P.·Mesuere, B.
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Abstract

Shotgun metagenomics is now commonplace to gain insights into communities from diverse environments, but fast, memory-friendly, and accurate tools are needed for deep taxonomic analysis of the metagenome data. To meet this need we developed UMGAP, a highly versatile open source command line tool implemented in Rust for taxonomic profiling of shotgun metagenomes. It differs from state-of-the-art tools in its use of protein code regions identified in short reads for robust taxonomic identifications, a broad-spectrum index that can identify both archaea, bacteria, eukaryotes and viruses, a non-monolithic design, and support for interactive visualizations of complex biodiversities.

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Van der Jeugt, F., Maertens, R., Steyaert, A., Verschaffelt, P., De Tender, C., Dawyndt, P., Mesuere, B.. 2021-05-20. UMGAP: the Unipept MetaGenomics Analysis Pipeline. https://doi.org/10.1101/2021.05.18.444604

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