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bioRxiv · 10.1101/2021.04.30.442178

Development of an open source program to identify the size of objects using bright-field microscopy - an automated calibration tool

Glowacki, G.·Gkantiragas, A.·Brett-Holt, B.·He, P.·Mihalik, D.
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Abstract

In light microscopy, eyepiece graticules are commonly used to gauge the size of objects at the micron scale. While this is a relatively simple tool to use, not all microscopes possess this feature. Furthermore, calibrating an eyepiece graticule with a stage micrometer can be time-consuming, particularly for inexperienced microscopists. Similarly, calculating the size of individual objects may also take some time. We present an open-source program to determine the size of objects under a microscope using Python and OpenCV. Taking photos of a stage micrometer under a microscope, we identify gradations on the micrometer and calculate the distance between lines on the micrometer in pixels. From this, we can infer the size of objects from bright-field microscopy images. We believe this will improve access to quantitative microscopy techniques and increase the speed at which samples may be analyzed by light microscopy. Future studies may aim to integrate this with machine learning for object identification.

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Glowacki, G., Gkantiragas, A., Brett-Holt, B., He, P., Mihalik, D.. 2021-05-01. Development of an open source program to identify the size of objects using bright-field microscopy - an automated calibration tool. https://doi.org/10.1101/2021.04.30.442178

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