Search bioRxiv⌕ Search

bioRxiv · 10.1101/2021.03.22.436408

Distribution, Epidemics dynamics and physiological races of wheat stem rust (Puccinia graminis f.sp. tritici Eriks and E. Henn) on irrigated wheat in the Awash River basin of Ethiopia

Abstract

Wheat is one of the high value important major crops of the globe. However, wheat stem rust is considered one of the determinant threats to wheat production in Ethiopia and the globe. So this study was conducted with the objective to assess disease intensity, seasonal distribution dynamics, and genetic variability and to determine virulence spectrum of stem rust in the irrigated wheat areas of Ethiopia. A total of 137 wheat farms were evaluated from 2014/15 - 2019/20 in six districts of Awash River basin. Farm plots were assessed every 5 - 10 km interval with X fashion, and data on disease incidence, severity, and healthy plants were scored with diseased wheat plant samples collection for stem rust race analysis. The seasonal trend of wheat stem rust disease was also compared to see the future importance of the diseases. The result revealed that the prevalence, incidence, and severity of stem rust were significantly varied among the different districts and seasons in the two regions. The survey results also indicated that about 71.7% of the wheat fields were affected by stem rust during the 2018/19 growing season. The overall incidence and mean severity of the disease during the same season were 49.02% and 29.27%, respectively. During 2019/20 about 63.7% of the wheat fields were affected by stem rust, which, however, the incidence (30.97%) and severity (17.22%) were lower than the previous season. Although the seasonal disease distribution was decreased, its spatial distribution was expanding into Lower Awash. The physiological and the genetic race analysis identified four dominant races (TTTTF, TKTTF TKKTF, and TTKTF) during 2018/19 and additional race (TKPTF) during 2019/20. Thus races are highly virulent and affect most of the Sr genes except Sr - 31 and Sr - 24. TTTTF and TKKTF are the widest virulence spectrum which affects 90% of the Sr genes. Thus, it can be concluded that the spatial and seasonal distribution of the disease was expanding. Moreover, most of the races were similar with rain-fed production, and thus care must be given for effective management of the diseases to both agro-ecologies. Therefore, these findings provide inputs or insight for breeders to think about the breeding programs in their crossing lines and wheat producers to reduce the damage of the disease in the irrigated ecologies. ETHICAL STATEMENTThus, surveys were conducted with the lateral aim of rust epidemics early warning and monitoring support program in the Awash River basin. Samples for this study were collected from farmers fields of the irrigated production areas in the Awash River basin. The disease was an air-borne disease that is difficult to contain. Still, we give maximum care during surveying through spore-free through self-sanitation after Pgt infested field observation to minimize induced disease dissemination to the communities in the production areas that no specific permissions were required for these locations. Field sites are on public access, and P. graminis f. sp. tritici is already an air-born pathogen that doesnt need special protection kinds. This work was our study experience in the endeavor in irrigated wheat technology dissemination.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Yesuf, N. S., Getahun, S., Hassen, S., Alemayehu, Y., Danu, K. G., Alemu, Z., Tesfaye, T., Hei, N. B., Blasch, G.. 2021-03-22. Distribution, Epidemics dynamics and physiological races of wheat stem rust (Puccinia graminis f.sp. tritici Eriks and E. Henn) on irrigated wheat in the Awash River basin of Ethiopia. https://doi.org/10.1101/2021.03.22.436408

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Trans-branching of polyubiquitin chains orchestrates the DNA replication stress response

Polyubiquitin chain geometry dictates functional consequences of ubiquitylation. Although branched polyubiquitin chains are abundant in cells, little is known about their functions. Here we show that branching on the DNA replication factor PCNA, mediated by the ubiquitin-conjugating enzyme UBE2K and involving lysines 63 and 48 of ubiquitin, orchestrates the sequence of events in response to replication stress. By inducing VCP-dependent extraction of PCNA from chromatin, branching promotes re-priming of stalled forks and necessitates a BRCA1-dependent pathway of daughter-strand gap repair. Our study identifies hyper-accumulation of daughter-strand gaps as the mechanistic basis underlying the toxicity of inhibitors of the PCNA-specific isopeptidase, USP1, in BRCA1-deficient cells. Moreover, an unexpected preference of UBE2K to operate in trans suggests a general timing mechanism to organize hierarchies amongst ubiquitin signals.

molecular biology↗

Impaired proteostasis is an early feature of the diabetic heart in humans and mice

Diabetes and obesity increase cardiac lipid levels leading to cardiomyopathy and heart failure. We hypothesized that intermittent fasting would reduce cardiac lipid levels. Surprisingly, intermittent fasting increased myocardial triglyceride content, but rescued mortality and attenuated cardiomyopathy in mice overexpressing cardiomyocyte acyl-CoA synthetase 1 (MHC-ACSL1). Lipid overload caused cardiomyocyte accumulation of polyubiquitinated protein aggregates containing desmin, a scaffolding intermediate filament protein, which intermittent fasting prevented. Furthermore, intermittent fasting reversed elevated myocardial C16:0 ceramide content, and knockdown of ceramide synthase CerS5 and CerS6 reduced palmitate-induced protein aggregation, highlighting a role for C16:0 ceramides in this pathology. Conversely, impairing aggrephagy with cardiomyocyte-specific p62 ablation induced heart failure in mice fed a high-fat diet, with paradoxically reduced cardiac lipid content. Crucially, non-failing diabetic human hearts also exhibited protein aggregate pathology. Taken together, these results demonstrate that impaired proteostasis characterizes cardiomyopathy from cardiac lipid overload and identify a promising new therapeutic target for this condition.

molecular biology↗

Spatial profiling and neurovascular communication in the developing and adolescent cortex following prenatal alcohol exposure

Fetal alcohol spectrum disorders (FASD) constitute a wide range of developmental, cognitive, and behavioral impairments caused by prenatal alcohol exposure (PAE). Although neuronal and vascular consequences of PAE have been studied, how alcohol affects the cerebrovasculature within the framework of the neurovascular unit (NVU) across development remains poorly understood. At minimum, the NVU comprises neurons, astrocyte endfeet, and endothelial cells (ECs), which coordinate to maintain brain homeostasis. Here, we used the NanoString Digital Spatial Profiling platform to characterize spatial transcriptomic data from neurons, astrocytes, and ECs from PAE and saccharin (SAC) control cortices at embryonic day 18 (E18) and postnatal day 28 (P28). Differentially expressed genes were then used for Ingenuity Pathway Analysis (IPA) to identify altered biological pathways and perform comparison analyses across developmental time points, while CellChat was used to infer cell cell communication networks. We uncovered thousands of differentially expressed genes and numerous altered pathways and biological processes in PAE cortices across development. Both IPA and CellChat analyses implicated dysregulation of vascular and extracellular matrix (ECM) remodeling, cell adhesion, and neuroinflammatory signaling. CellChat further predicted the loss of several key bidirectional relationships and altered ligand-receptor interactions among neurovascular cell types at E18 and P28. Overall, these findings identify PAE associated alterations in neurovascular gene expression and intercellular signaling across development, providing potential mechanisms by which PAE may disrupt neurodevelopment.

molecular biology↗