Robotic Antimicrobial Susceptibility Platform (RASP): A Next Generation Approach to One-Health Surveillance of Antimicrobial Resistance.

Truswell, A.; Abraham, R.; O'Dea, M.; Lee, Z. Z.; Lee, T.; Laird, T.; Blinco, J.; Kaplan, S.; Turnidge, J.; Trott, D. J.; Jordan, D.; Abraham, S.

doi:10.1101/2021.03.09.434587

bioRxiv · 10.1101/2021.03.09.434587

Robotic Antimicrobial Susceptibility Platform (RASP): A Next Generation Approach to One-Health Surveillance of Antimicrobial Resistance.

Truswell, A.·Abraham, R.·O'Dea, M.·Lee, Z. Z.·Lee, T.·Laird, T.·Blinco, J.·Kaplan, S.·Turnidge, J.·Trott, D. J.·Jordan, D.·Abraham, S.

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Abstract

BackgroundSurveillance of antimicrobial resistance (AMR) is critical to reducing its wide-reaching impact. Its reliance on sample size invites solutions to longstanding constraints regarding scalability. A robotic platform (RASP) was developed for high-throughput AMR surveillance in accordance with internationally recognised standards (CLSI and ISO 20776-1:2019) and validated through a series of experiments. MethodsExperiment A compared RASPs ability to achieve consistent MICs to that of a human technician across eight replicates for four E. coli isolates. Experiment B assessed RASPs agreement with human performed MICs across 91 E. coli isolates with a diverse range of AMR profiles. Additionally, to demonstrate its real-world applicability, the RASP workflow was then applied to five faecal samples where a minimum of 47 E. coli per animal (239 total) were evaluated using an AMR indexing framework. ResultsFor each drug-rater-isolate combination in experiment A, there was a clear consensus of the MIC and deviation from the consensus remained within one doubling-dilution (the exception being gentamicin at two dilutions). Experiment B revealed a concordance correlation coefficient of 0.9670 (95%CI: 0.9670 - 0.9670) between the robot and human performed MICs. RASPs application to the five faecal samples highlighted the intra-animal diversity of gut commensal E. coli, identifying between five and nine unique isolate AMR phenotypes per sample. ConclusionsWhile adhering to internationally accepted guidelines, RASP was superior in throughput, cost and data resolution when compared to an experienced human technician. Integration of robotics platforms in the microbiology laboratory is a necessary advancement for future One-Health AMR endeavours.

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Truswell, A., Abraham, R., O'Dea, M., Lee, Z. Z., Lee, T., Laird, T., Blinco, J., Kaplan, S., Turnidge, J., Trott, D. J., Jordan, D., Abraham, S.. 2021-03-09. Robotic Antimicrobial Susceptibility Platform (RASP): A Next Generation Approach to One-Health Surveillance of Antimicrobial Resistance.. https://doi.org/10.1101/2021.03.09.434587

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