Revision and annotation of DNA barcode records for marine invertebrates: report of the 8th iBOL conference hackathon

Radulovici, A. E.; Vieira, P. E.; Duarte, S.; Teixeira, M. A. L.; Borges, L. M. S.; Deagle, B.; Majaneva, S.; Redmond, N.; Schultz, J. A.; Costa, F. O.

doi:10.1101/2021.03.07.434272

bioRxiv · 10.1101/2021.03.07.434272

Revision and annotation of DNA barcode records for marine invertebrates: report of the 8th iBOL conference hackathon

Radulovici, A. E.·Vieira, P. E.·Duarte, S.·Teixeira, M. A. L.·Borges, L. M. S.·Deagle, B.·Majaneva, S.·Redmond, N.·Schultz, J. A.·Costa, F. O.

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Abstract

The accuracy of the identification of unknown specimens using DNA barcoding and metabarcoding relies on reference libraries containing records with reliable taxonomy and sequence quality. A rampant growth in barcode data led to a stringent need for data curation, especially in taxonomically difficult groups such as marine invertebrates. A major effort in curating marine barcode data deposited in the Barcode of Life Data Systems (BOLD) has been undertaken during the 8th International Barcode of Life Conference (Trondheim, Norway, 2019). For practical reasons, only major taxonomic groups were reviewed and annotated (crustaceans, echinoderms, molluscs, and polychaetes). The congruence of Linnean names with Barcode Index Numbers (BINs) was investigated, and the records deemed uncertain were annotated with four tags: a) MIS-ID (misidentified, mislabeled or contaminated records), b) AMBIG (ambiguous records unresolved with the current data), c) COMPLEX (species occurring in multiple BINs), and d) SHARE (barcodes shared between species). A total of 83,712 specimen records corresponding to 7,576 species were reviewed and 39% of the species were tagged (7% MIS-ID, 17% AMBIG, 14% COMPLEX, and 1% SHARE). High percentages (>50%) of AMBIG tags were recorded in gastropods, whereas COMPLEX tags dominated in crustaceans and polychaetes. This high proportion of tagged species reflects either flaws in the barcoding workflow (e.g., misidentification, cross -contamination) or taxonomic difficulties (e.g., synonyms, undescribed species). Although data curation is crucial for barcode applications, such manual efforts of reviewing large datasets are not sustainable and the implementation of automated solutions to the furthest possible extent is hi ghly desirable.

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Radulovici, A. E., Vieira, P. E., Duarte, S., Teixeira, M. A. L., Borges, L. M. S., Deagle, B., Majaneva, S., Redmond, N., Schultz, J. A., Costa, F. O.. 2021-03-08. Revision and annotation of DNA barcode records for marine invertebrates: report of the 8th iBOL conference hackathon. https://doi.org/10.1101/2021.03.07.434272

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