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bioRxiv · 10.1101/2021.02.18.431922

ESC - a comprehensive resource for SARS-CoV-2 immune escape variants

Rophina, M.·Pandhare, K.·Shamnath, A.·Imran, M.·Jolly, B.·Scaria, V.
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Abstract

Ever since the breakout of COVID-19 disease, ceaseless genomic research to inspect the epidemiology and evolution of the pathogen has been undertaken globally. Large scale viral genome sequencing and analysis have uncovered the functional impact of numerous genetic variants in disease pathogenesis and transmission. Emerging evidence of mutations in spike protein domains escaping antibody neutralization is reported. We have built a database with precise collation of manually curated variants in SARS-CoV-2 from literature with potential escape mechanisms from a range of neutralizing antibodies. This comprehensive repository encompasses a total of 5258 variants accounting for 2068 unique variants tested against 230 antibodies, patient convalescent plasma and vaccine breakthrough events. This resource enables the user to gain access to an extensive annotation of SARS-CoV-2 escape variants which would contribute to exploring and understanding the underlying mechanisms of immune response against the pathogen. The resource is available at http://clingen.igib.res.in/esc/ GRAPHICAL ABSTRACT O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=143 SRC="FIGDIR/small/431922v2_ufig1.gif" ALT="Figure 1"> View larger version (24K): org.highwire.dtl.DTLVardef@12bd86forg.highwire.dtl.DTLVardef@18e7279org.highwire.dtl.DTLVardef@fd97f8org.highwire.dtl.DTLVardef@104434b_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Rophina, M., Pandhare, K., Shamnath, A., Imran, M., Jolly, B., Scaria, V.. 2021-02-19. ESC - a comprehensive resource for SARS-CoV-2 immune escape variants. https://doi.org/10.1101/2021.02.18.431922

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