Spatially confined sub-tumor microenvironments orchestrate pancreatic cancer pathobiology

Grünwald, B. T.; Devisme, A.; Andrieux, G.; Vyas, F.; Aliar, K.; McCloskey, C. W.; Macklin, A.; Jang, G. H.; Denroche, R.; Romero, J. M.; Bavi, P.; Bronsert, P.; Notta, F.; O'Kane, G.; Wilson, J.; Knox, J.; Tamblyn, L.; Radulovich, N.; Fischer, S. E.; Boerries, M.; Gallinger, S.; Kislinger, T. R.; Khokha, R.

doi:10.1101/2021.02.18.431890

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bioRxiv · 10.1101/2021.02.18.431890

Spatially confined sub-tumor microenvironments orchestrate pancreatic cancer pathobiology

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Abstract

Pancreatic ductal adenocarcinoma (PDAC) remains resistant to most treatments and demonstrates a complex pathobiology. Here, we deconvolute regional heterogeneity in the human PDAC tumor microenvironment (TME), a long-standing obstacle, to define precise stromal contributions to PDAC progression. Large scale integration of histology-guided multiOMICs with clinical data sets and functional in vitro models uncovers two microenvironmental programs in PDAC that were anchored in fibroblast differentiation states. These sub-tumor microenvironments (subTMEs) co-occurred intratumorally and were spatially confined, producing patient-specific cellular and molecular heterogeneity associated with shortened patient survival. Each subTME was uniquely structured to support discrete aspects of tumor biology: reactive regions rich in activated fibroblast communities were immune-hot and promoted aggressive tumor progression while deserted regions enriched in extracellular matrix supported tumor differentiation yet were markedly chemoprotective. In conclusion, PDAC regional heterogeneity derives from biologically distinct reactive and protective TME elements with a defined, active role in PDAC progression. Graphical Abstract & Key findings O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=191 SRC="FIGDIR/small/431890v1_ufig1.gif" ALT="Figure 1"> View larger version (73K): org.highwire.dtl.DTLVardef@17adabdorg.highwire.dtl.DTLVardef@aee778org.highwire.dtl.DTLVardef@deae00org.highwire.dtl.DTLVardef@1718272_HPS_FORMAT_FIGEXP M_FIG C_FIG O_LIPDAC regional heterogeneity originates in sub-tumor microenvironments (subTMEs) C_LIO_LISubTMEs exhibit distinct immune phenotypes and CAF differentiation states C_LIO_LIDifferent subTMEs are either tumor-promoting or chemoprotective C_LIO_LIIntratumoral subTME co-occurrence links stromal heterogeneity to patient outcome C_LI

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Grünwald, B. T., Devisme, A., Andrieux, G., Vyas, F., Aliar, K., McCloskey, C. W., Macklin, A., Jang, G. H., Denroche, R., Romero, J. M., Bavi, P., Bronsert, P., Notta, F., O'Kane, G., Wilson, J., Knox, J., Tamblyn, L., Radulovich, N., Fischer, S. E., Boerries, M., Gallinger, S., Kislinger, T. R., Khokha, R.. 2021-02-19. Spatially confined sub-tumor microenvironments orchestrate pancreatic cancer pathobiology. https://doi.org/10.1101/2021.02.18.431890

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