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bioRxiv · 10.1101/2021.02.03.429425

APICURON: a database to credit and acknowledge the work of biocurators

Hatos, A.·Quaglia, F.·Piovesan, D.·Tosatto, S. C. E.
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Abstract

APICURON is an open and freely accessible resource that tracks and credits the work of biocurators across multiple participating knowledgebases. Biocuration is essential to extract knowledge from research data and make it available in a structured and standardized way to the scientific community. However, processing biological data - mainly from literature - requires a huge effort which is difficult to quantify and acknowledge. APICURON collects biocuration events from third party resources and aggregates this information, spotlighting biocurator contributions. APICURON promotes biocurator engagement implementing gamification concepts like badges, medals and leaderboards and at the same time provides a monitoring service for registered resources and for biocurators themselves. APICURON adopts a data model that is flexible enough to represent and track the majority of biocuration activities. Biocurators are identified through their ORCID. The definition of curation events, scoring systems and rules for assigning badges and medals are resource-specific and easily customizable. Registered resources can transfer curation activities on the fly through a secure and robust Application Programming Interface (API). Here we show how simple and effective it is to connect a resource to APICURON describing the DisProt database of intrinsically disordered proteins as a use case. We believe APICURON will provide biological knowledgebases with a service to recognize and credit the effort of their biocurators, monitor their activity and promote curators engagement. Database URL: https://apicuron.org

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Hatos, A., Quaglia, F., Piovesan, D., Tosatto, S. C. E.. 2021-02-03. APICURON: a database to credit and acknowledge the work of biocurators. https://doi.org/10.1101/2021.02.03.429425

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