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bioRxiv · 10.1101/2020.12.03.400754

webMCP-counter: a web interface for transcriptomics-based quantification of immune and stromal cells in heterogeneous human or murine samples

Meylan, M.·Becht, E.·Sautes-Fridman, C.·de Reynies, A.·Fridman, W. H.·Petitprez, F.
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Abstract

SummaryWe previously reported MCP-counter and mMCP-counter, methods that allow precise estimation of the immune and stromal composition of human and murine samples from bulk transcriptomic data, but they were only distributed as R packages. Here, we report webMCP-counter, a user-friendly web interface to allow all users to use these methods, regardless of their proficiency in the R programming language. Availability and ImplementationFreely available from http://134.157.229.105:3838/webMCP/. Website developed with the R package shiny. Source code available from GitHub: https://github.com/FPetitprez/webMCP-counter.

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Meylan, M., Becht, E., Sautes-Fridman, C., de Reynies, A., Fridman, W. H., Petitprez, F.. 2020-12-03. webMCP-counter: a web interface for transcriptomics-based quantification of immune and stromal cells in heterogeneous human or murine samples. https://doi.org/10.1101/2020.12.03.400754

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