dsSwissKnife: An R package for federated data analysis

Dragan, I.; Sparso, T.; Kuznetsov, D.; Slieker, R.; Ibberson, M.

doi:10.1101/2020.11.17.386813

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bioRxiv · 10.1101/2020.11.17.386813

dsSwissKnife: An R package for federated data analysis

Dragan, I.·Sparso, T.·Kuznetsov, D.·Slieker, R.·Ibberson, M.

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Abstract

SummarydsSwissKnife is an R package that enables several powerful analyses to be performed on federated datasets. The package works alongside DataSHIELD and extends its functionality. We have developed and implemented dsSwissKnife in a large IMI project on type 2 diabetes, RHAPSODY, where data from 10 observational cohorts have been harmonised and federated in CDISC SDTM format and made available for biomarker discovery. Availability and implementationdsSwissKnife is freely available online at https://github.com/sib-swiss/dsSwissKnife. The package is distributed under the GNU General Public License version 3. Contactmark.ibberson@sib.swiss

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Dragan, I., Sparso, T., Kuznetsov, D., Slieker, R., Ibberson, M.. 2020-11-20. dsSwissKnife: An R package for federated data analysis. https://doi.org/10.1101/2020.11.17.386813

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