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bioRxiv · 10.1101/2020.07.21.187609

BioContainers Registry: searching for bioinformatics tools, packages and containers

Bai, J.·Bandla, C. R.·Guo, J.·Vera Alvarez, R.·Vizcaino, J. A.·Bai, M.·Moreno Cortez, P. A.·Gruning, B. A.·Sallou, O.·Perez-Riverol, Y.
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Abstract

1BioContainers is an open-source project that aims to create, store, and distribute bioinformatics software containers and packages. The BioContainers community has developed a set of guidelines to standardize the software containers including the metadata, versions, licenses, and/or software dependencies. BioContainers supports multiple packaging and containers technologies such as Conda, Docker, and Singularity. Here, we introduce the BioContainers Registry and Restful API to make containerized bioinformatics tools more findable, accessible, interoperable, and reusable (FAIR). BioContainers registry provides a fast and convenient way to find and retrieve bioinformatics tools packages and containers. By doing so, it will increase the use of bioinformatics packages and containers while promoting replicability and reproducibility in research.

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Bai, J., Bandla, C. R., Guo, J., Vera Alvarez, R., Vizcaino, J. A., Bai, M., Moreno Cortez, P. A., Gruning, B. A., Sallou, O., Perez-Riverol, Y.. 2020-07-22. BioContainers Registry: searching for bioinformatics tools, packages and containers. https://doi.org/10.1101/2020.07.21.187609

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