Search bioRxivSearch

bioRxiv · 10.1101/2020.06.22.163808

Spatio-temporal Characteristics of Noun and Verb Processing during Sentence Comprehension in the Brain

Abstract

The human brain is very effective at integrating new words one by one into the composed representation of a sentence as it is read left-to-right. This raises the important question of what happens to the neural representations of words present earlier in the sentence? For example, do the strength of word representations encountered earlier on in the sentence remain constant or do they evolve as additional words are processed? Representation of words by neural activity in the brain has been the subject of several previous studies. We perform the experiment with a naturalistic task in which the subjects read simple active and passive sentences. Naturalistic studies have tended to explore words in isolation or in a very limited context (e.g., adjective-noun phrases). Representation of previously encountered words during incremental sentence reading, and how such representation evolve as more parts of a sentence are read, is a fundamental but unexplored problem - we take a first step in this direction. In particular, we examine the spatio-temporal characteristics of neural activity encoding nouns and verbs encountered in a sentence as it is read word-by-word. We use Magnetoencephalography (MEG) to passively observe neural activity, providing 1 ms temporal resolution. Our experiments reveal that nouns and verbs read early in the sentence have a varying influence on neural activity while reading subsequent words, decreasing and increasing at particular word positions in active and passively voiced sentences, with particularly important contributions to activity in frontal and temporal cortical regions. We find the noun and verb information to be decodable from the neural activity for several seconds after sentence reading has completed. Our exploration is also the first to study the effect of question-answering task on the neural representation of the words post-sentence. We are releasing our 300 sentence MEG dataset to encourage further research in this important area.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Jat, S., Laing, E. J. C., Talukdar, P., Mitchell, T.. 2020-06-22. Spatio-temporal Characteristics of Noun and Verb Processing during Sentence Comprehension in the Brain. https://doi.org/10.1101/2020.06.22.163808

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

The Unreasonable Effectiveness of Cell Types in Describing Neuronal Physiological Features

Single-cell RNA sequencing (scRNA-seq) captures detailed gene expression profiles at scale, while patch-clamp recordings measure intrinsic neuronal electrophysiological properties. Modeling the relations between these two modalities remains a challenge. Here, we compare how well electrophysiological features can be predicted by traditional transcriptomic cell type classification, representations derived from a foundational model (scGPT) pretrained on large-scale scRNA-seq datasets, ion channel-coding genes, and highly variable genes. Using paired transcriptomic and electrophysiological patch-sequencing data from 495 human neurons from neurosurgical tissue, we find that cluster-level cell type representations consistently outperform highly variable gene selection, ion channel gene selection, and context-enriched scGPT embeddings. Notably, performance varies across model architectures and initializations, and the best results are obtained by combining the outputs of separate cell type and scGPT-based models. Together, these findings suggest that traditional discrete cellular classification is highly effective in predicting physiological features. For maximum performance it can be complemented by pretrained transformer models.

neuroscience

A nonlinear inhibition pathway underlying cortical responses to tuned holographic optogenetic perturbations

Optogenetics enables causal manipulation of cortical activity. Perturbation responses can be counterintuitive due to network interactions, making theory essential for predicting them. Existing approaches often rely on linear approximations, which fail for many biologically relevant perturbations. Here we develop a nonlinear theory of responses to holographic perturbations in cell-type-specific recurrent networks with structured connectivity. We fit a nonlinear model to mouse V1 data, which shows cotuned-ensemble suppression: perturbing spatially clustered neurons with similar preferred orientations yields markedly stronger short-range suppression than perturbing untuned ensembles. We show that cotuned-ensemble suppression arises from a feature-tuned, nonlinear inhibition pathway implicating somatostatin-positive (SST) interneurons. The theory predicts that cotuned ensembles suppress parvalbumin-positive (PV) neurons but facilitate SST neurons, and links the degree of cotuned-ensemble suppression or facilitation to the variance of the SST response. This framework identifies mechanisms by which nonlinear inhibition sculpts cortical dynamics and establishes a predictive basis for targeted optogenetic interventions.

neuroscience

Proteomic signatures of APOE ε4 across human tissues and cell types in Alzheimers disease

The apolipoprotein E {varepsilon}4 (APOE {varepsilon}4) allele is the strongest genetic risk factor for late-onset Alzheimers disease (AD). However, the underlying molecular mechanisms remain unclear. This study included 1691 participants from the Religious Orders Study and Rush Memory and Aging Project (ROSMAP), 1226 participants from the Accelerating Medicines Partnership - Alzheimers Disease (AMP-AD) Diverse Cohorts Study, and 735 participants from the Alzheimers Disease Neuroimaging Initiative (ADNI). To characterise APOE {varepsilon}4 molecular effects, we analysed proteomic data from plasma, cerebrospinal fluid (CSF), and induced pluripotent stem cell (iPSC)-derived astrocytes and neurons, as well as transcriptomic and proteomic data from multiple brain regions. The association of APOE {varepsilon}4 with AD neuropathology was also examined. APOE {varepsilon}4 carriers shared a plasma proteomic signature enriched for immune processes, irrespective of AD diagnosis. A machine learning classifier trained on this signature discriminated APOE {varepsilon}4 carriers from non-carriers in an independent cohort using CSF proteomics. APOE {varepsilon}4 carriage was associated with higher Braak stages and Consortium to Establish a Registry for Alzheimers Disease (CERAD) score. However, only limited APOE {varepsilon}4-associated transcriptomic and proteomic changes were observed in bulk brain tissue, with poor cross-layer concordance. Proteomic analyses of iPSC-derived astrocytes and neurons further revealed cell-type-specific APOE {varepsilon}4-associated changes. APOE {varepsilon}4 is associated with a consistent proteomic signature across plasma and CSF. Its molecular effects in the brain differ across cell types, brain regions and molecular layers. These findings support the need for cell-type-resolved multi-omic studies to elucidate how APOE {varepsilon}4 confers AD risk.

neuroscience