Search bioRxiv⌕ Search
Home/Archive/bioRxiv

bioRxiv · 10.1101/2020.05.25.115121

Role of Prefrontal Cortex during Sudoku task: fNIRS study

Patil, A.·Deepak, K. K.·Kochhar, K. P.
View original source ↗Export metadata ↓

Abstract

Sudoku is a popular leisure time activity that involves no math, but is based on logic based combinatorial number placement in a matrix. Many studies have been dedicated towards finding an algorithm to solve Sudoku but investigation of the neural substrates involved in Sudoku has been challenging. It is difficult to measure the brain activity during 9x9 Sudoku using traditional fMRI technique due to the procedural constraints. 16 optodes fNIRS (functional near infrared spectroscopy) forms an excellent alternative to study the activity of prefrontal cortex (PFC) during Sudoku task. Sudoku task was divided into two steps to understand the differential function of the PFC while applying heuristic rules. Classical two-way ANOVA as well as General Linear Model based approach was used to analyze the data. 28-noise free recording from right-handed participants revealed increased activity in all 16 optode locations during step 1 (3 x 3 subgrids) and step 2 (easy level 9x9 Sudoku) as compared to rest. Contrasting the step2-step1 revealed that medial regions of PFC were preferentially activated. These findings suggest the role of these regions, while applying multiple heuristic rules to solve 9x9 Sudoku puzzle. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=156 SRC="FIGDIR/small/115121v2_ufig1.gif" ALT="Figure 1"> View larger version (38K): org.highwire.dtl.DTLVardef@88c44eorg.highwire.dtl.DTLVardef@1100737org.highwire.dtl.DTLVardef@149b4a1org.highwire.dtl.DTLVardef@1f1d055_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIThis is first fNIRS study that tried to unravel the role of PFC during Sudoku task. C_LIO_LIUniquely divided the Sudoku task into two steps to understand the differential role of PFC while applying multiple heuristic rules. C_LIO_LIBoth the medial and lateral regions of PFC are activated during Sudoku task. C_LIO_LIHowever, the medial regions of PFC play a differential role, especially when we consider the row and the column rule of Sudoku. C_LI

Source connections

Explore related subjects

neurosciencePreprint

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Patil, A., Deepak, K. K., Kochhar, K. P.. 2020-05-25. Role of Prefrontal Cortex during Sudoku task: fNIRS study. https://doi.org/10.1101/2020.05.25.115121

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

bioRxiv2026

The Unreasonable Effectiveness of Cell Types in Describing Neuronal Physiological Features

Single-cell RNA sequencing (scRNA-seq) captures detailed gene expression profiles at scale, while patch-clamp recordings measure intrinsic neuronal electrophysiological properties. Modeling the relations between these two modalities remains a challenge. Here, we compare how well electrophysiological features can be predicted by traditional transcriptomic cell type classification, representations derived from a foundational model (scGPT) pretrained on large-scale scRNA-seq datasets, ion channel-coding genes, and highly variable genes. Using paired transcriptomic and electrophysiological patch-sequencing data from 495 human neurons from neurosurgical tissue, we find that cluster-level cell type representations consistently outperform highly variable gene selection, ion channel gene selection, and context-enriched scGPT embeddings. Notably, performance varies across model architectures and initializations, and the best results are obtained by combining the outputs of separate cell type and scGPT-based models. Together, these findings suggest that traditional discrete cellular classification is highly effective in predicting physiological features. For maximum performance it can be complemented by pretrained transformer models.

neuroscience↗
bioRxiv2026

A nonlinear inhibition pathway underlying cortical responses to tuned holographic optogenetic perturbations

Optogenetics enables causal manipulation of cortical activity. Perturbation responses can be counterintuitive due to network interactions, making theory essential for predicting them. Existing approaches often rely on linear approximations, which fail for many biologically relevant perturbations. Here we develop a nonlinear theory of responses to holographic perturbations in cell-type-specific recurrent networks with structured connectivity. We fit a nonlinear model to mouse V1 data, which shows cotuned-ensemble suppression: perturbing spatially clustered neurons with similar preferred orientations yields markedly stronger short-range suppression than perturbing untuned ensembles. We show that cotuned-ensemble suppression arises from a feature-tuned, nonlinear inhibition pathway implicating somatostatin-positive (SST) interneurons. The theory predicts that cotuned ensembles suppress parvalbumin-positive (PV) neurons but facilitate SST neurons, and links the degree of cotuned-ensemble suppression or facilitation to the variance of the SST response. This framework identifies mechanisms by which nonlinear inhibition sculpts cortical dynamics and establishes a predictive basis for targeted optogenetic interventions.

neuroscience↗
bioRxiv2026

Proteomic signatures of APOE ε4 across human tissues and cell types in Alzheimers disease

The apolipoprotein E {varepsilon}4 (APOE {varepsilon}4) allele is the strongest genetic risk factor for late-onset Alzheimers disease (AD). However, the underlying molecular mechanisms remain unclear. This study included 1691 participants from the Religious Orders Study and Rush Memory and Aging Project (ROSMAP), 1226 participants from the Accelerating Medicines Partnership - Alzheimers Disease (AMP-AD) Diverse Cohorts Study, and 735 participants from the Alzheimers Disease Neuroimaging Initiative (ADNI). To characterise APOE {varepsilon}4 molecular effects, we analysed proteomic data from plasma, cerebrospinal fluid (CSF), and induced pluripotent stem cell (iPSC)-derived astrocytes and neurons, as well as transcriptomic and proteomic data from multiple brain regions. The association of APOE {varepsilon}4 with AD neuropathology was also examined. APOE {varepsilon}4 carriers shared a plasma proteomic signature enriched for immune processes, irrespective of AD diagnosis. A machine learning classifier trained on this signature discriminated APOE {varepsilon}4 carriers from non-carriers in an independent cohort using CSF proteomics. APOE {varepsilon}4 carriage was associated with higher Braak stages and Consortium to Establish a Registry for Alzheimers Disease (CERAD) score. However, only limited APOE {varepsilon}4-associated transcriptomic and proteomic changes were observed in bulk brain tissue, with poor cross-layer concordance. Proteomic analyses of iPSC-derived astrocytes and neurons further revealed cell-type-specific APOE {varepsilon}4-associated changes. APOE {varepsilon}4 is associated with a consistent proteomic signature across plasma and CSF. Its molecular effects in the brain differ across cell types, brain regions and molecular layers. These findings support the need for cell-type-resolved multi-omic studies to elucidate how APOE {varepsilon}4 confers AD risk.

neuroscience↗