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bioRxiv · 10.1101/2020.05.23.111385

COVIDep: A web-based platform for real-time reporting of vaccine target recommendations for SARS-CoV-2

Ahmed, S. F.·Quadeer, A. A.·McKay, M. R.
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Abstract

We introduce COVIDep (https://COVIDep.ust.hk), a web-based platform that provides immune target recommendations for guiding SARS-CoV-2 vaccine development. COVIDep implements a protocol that pools together publicly-available genetic data for SARS-CoV-2 and epitope data for SARS-CoV to identify B cell and T cell epitopes that present potential immune targets for SARS-CoV-2. Correspondences between outputs of COVIDep and immune responses recorded in COVID-19 patients and preclinical vaccine trials are also indicated. The platform is user-friendly, flexible, and based on up-to-date data. It may help guide vaccine designs and associated experimental studies for SARS-CoV-2.

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Ahmed, S. F., Quadeer, A. A., McKay, M. R.. 2020-05-24. COVIDep: A web-based platform for real-time reporting of vaccine target recommendations for SARS-CoV-2. https://doi.org/10.1101/2020.05.23.111385

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