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bioRxiv · 10.1101/2020.05.22.110718

Chromosome-scale genome assembly of Fusarium oxysporum strain Fo47, a fungal endophyte and biocontrol agent

Wang, B.·Yu, H.·Jia, Y.·Dong, Q.·Steinberg, C.·Alabouvette, C.·Edel-Hermann, V.·Kistler, H. C.·Ye, K.·Ma, L.-J.·Guo, L.
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Abstract

Here, we report a chromosome-level genome assembly of Fusarium oxysporum strain Fo47 (12 pseudomolecules; contig N50: 4.52Mb), generated using a combination of PacBio long-read, Illumina pair-ended and Hi-C sequencing data. Although F. oxysporum causes vascular wilt to over 100 plant species, the strain Fo47 is classified as an endophyte and widely used as a biocontrol agent for plant disease control. The Fo47 genome carries a single accessory chromosome of 4.23 Mb, compared to the reference genome of F. oxysporum f.sp. lycopersici strain Fol4287. The high-quality assembly and annotation of the Fo47 genome will be a valuable resource for studying the mechanisms underlying the endophytic interactions between F. oxysporum and plants, as well as deciphering the genome evolution of the F. oxysporum species complex.

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Wang, B., Yu, H., Jia, Y., Dong, Q., Steinberg, C., Alabouvette, C., Edel-Hermann, V., Kistler, H. C., Ye, K., Ma, L.-J., Guo, L.. 2020-05-23. Chromosome-scale genome assembly of Fusarium oxysporum strain Fo47, a fungal endophyte and biocontrol agent. https://doi.org/10.1101/2020.05.22.110718

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