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bioRxiv · 10.1101/2020.05.18.102657

Human es-fMRI Resource: Concurrent deep-brain stimulation and whole-brain functional MRI

Thompson, W. H.·Nair, R.·Oya, H.·Esteban, O.·Shine, J. M.·Petkov, C.·Poldrack, R. A.·Howard, M.·Adolphs, R.
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Abstract

Mapping the causal effects of one brain region on another (effective connectivity) is a challenging problem in neuroscience, since it requires invasive direct manipulation of brain function, together with whole-brain measurement of the effects produced. Here we establish a unique resource and present data from 26 human patients who underwent electrical stimulation during functional magnetic resonance imaging (es-fMRI). The patients had medically refractory epilepsy requiring surgically implanted intracranial electrodes in cortical and subcortical locations. One or multiple contacts on these electrodes were stimulated while simultaneously recording BOLD-fMRI activity in a block design. Multiple runs exist for patients with different stimulation sites. We describe the resource, data collection process, preprocessing using the fMRIPrep analysis pipeline and management of artifacts, and provide end-user analyses to visualize distal brain activation produced by site-specific electrical stimulation. The data are organized according to the brain imaging data structure (BIDS) specification, and are available for analysis or future dataset contributions on openneuro.org including both raw and preprocessed data.

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Thompson, W. H., Nair, R., Oya, H., Esteban, O., Shine, J. M., Petkov, C., Poldrack, R. A., Howard, M., Adolphs, R.. 2020-05-20. Human es-fMRI Resource: Concurrent deep-brain stimulation and whole-brain functional MRI. https://doi.org/10.1101/2020.05.18.102657

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