Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity: Mount Sinai DToxS LINCS Center Dataset

Xiong, Y.; Liu, T.; Chen, T.; Hansen, J.; Hu, B.; Chen, Y.; Jayaraman, G.; Schürer, S.; Vidovic, D.; Goldfarb, J.; Sobie, E. A.; Birtwistle, M. R.; Iyengar, R.; Li, H.; Azeloglu, E. U.

doi:10.1101/2020.02.26.966606

bioRxiv · 10.1101/2020.02.26.966606

Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity: Mount Sinai DToxS LINCS Center Dataset

Xiong, Y.·Liu, T.·Chen, T.·Hansen, J.·Hu, B.·Chen, Y.·Jayaraman, G.·Schürer, S.·Vidovic, D.·Goldfarb, J.·Sobie, E. A.·Birtwistle, M. R.·Iyengar, R.·Li, H.·Azeloglu, E. U.

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Abstract

The Drug Toxicity Signature Generation Center (DToxS) at the Icahn School of Medicine at Mount Sinai is one of the centers of the NIH Library of Integrated Network-Based Cellular Signatures (LINCS) program. A key aim of DToxS is to generate both proteomic and transcriptomic signatures that can predict adverse effects, especially cardiotoxicity, of kinase inhibitors approved by the Food and Drug Administration. Towards this goal, high throughput shot-gun proteomics experiments (317 cell line/drug combinations + 64 control lysates) have been conducted at the Center for Advanced Proteomics Research at Rutgers University - New Jersey Medical School. Using computational network analyses, these proteomic data can be integrated with transcriptomic signatures generated in tandem to identify cellular signatures of cardiotoxicity that may predict kinase inhibitor-induced toxicity and possible mitigation. Both raw and processed proteomics data have been carefully screened for quality and made publicly available via the PRIDE database. As such, this broad protein kinase inhibitor-stimulated cardiomyocyte proteomic data and signature set is valuable for the prediction of drug toxicities. Links to: Metadata Tables O_TBL View this table: org.highwire.dtl.DTLVardef@1cda9f8org.highwire.dtl.DTLVardef@1520e05org.highwire.dtl.DTLVardef@16a35borg.highwire.dtl.DTLVardef@3ee6e7org.highwire.dtl.DTLVardef@1a98664_HPS_FORMAT_FIGEXP M_TBL C_TBL

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Xiong, Y., Liu, T., Chen, T., Hansen, J., Hu, B., Chen, Y., Jayaraman, G., Schürer, S., Vidovic, D., Goldfarb, J., Sobie, E. A., Birtwistle, M. R., Iyengar, R., Li, H., Azeloglu, E. U.. 2020-02-26. Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity: Mount Sinai DToxS LINCS Center Dataset. https://doi.org/10.1101/2020.02.26.966606

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