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bioRxiv · 10.1101/2020.02.11.941773

read_haps: using read haplotypes to detect same species contamination in DNA sequences.

Halldorsson, B. V.
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Abstract

MotivationData analysis is requisite on reliable data. In genetics this includes verifying that the sample is not contaminated with another, a problem ubiquitous in biology. ResultsIn human, and other diploid species, DNA contamination from the same species can be found by the presence of three haplotypes between polymorphic SNPs. read_haps is a tool that detects sample contamination from short read whole genome sequencing data. Availabilitygithub.com/DecodeGenetics/read_haps Contactbjarni.halldorsson@decode.is

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Halldorsson, B. V.. 2020-02-12. read_haps: using read haplotypes to detect same species contamination in DNA sequences.. https://doi.org/10.1101/2020.02.11.941773

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