Search bioRxiv⌕ Search

bioRxiv · 10.1101/2020.01.17.910240

Phytochemical screening, GC-MS profiling of invasive cocklebur (Xanthium strumarium)-insect-pathogen interaction and simulated volatile chemical signaling at Northeast China

Abstract

Invasive cocklebur (Xanthium strumarium) is characterized by its excellent genetic and ecological plasticity, ability to spread in agriculture crops. There is a dire need to locate useful management strategies to control this invasive weed at diversified latitudinal gradients. In ecology, there is weak evidence that the damage caused by the natural enemy varies with latitudes. Therefore, we investigated this evidence with the help of transect quadratic ecological sampling method which was conducted randomly at ten different sites of Northeast China. Overall, significantly high infestation of gall-forming insect (Epiblema strenuana) was observed on Xanthium leaves (21.16%) at 41.51279{degrees}N, followed by 40.2241{degrees}N latitude. Similarly, there was a significantly high abundance of Epiblema infestation (7.3) with high damage (3.88%) at 41.51279{degrees}N and 40.12749{degrees}N latitude. Likewise, the fungal abundance (5.6) of rust i.e. Puccinia xanthii (presenting 16.23% attack) was dominated significantly at 41.51279{degrees}N. Hence, high pathogen infection rate (8.97%) was detected at 40.2241{degrees}N. On the other hand growth parameters, i.e. plant height (cm), stem diameter (mm) vary with latitude and longitudinal trends. In our experiment, of plant natural enemy interaction provides the evidence-based indication the Epiblema abundance, was diversified at 41.51279{degrees}N, and P. xanthii infection was most frequent at 40.22411{degrees}N latitudes. This study provides an evidence-based indication that natural enemy pressure varies with latitude, however this investigations gave valuable information that insect and phytopathological fungus having biological control potential against Xanthium strumarium invasive weed. Secondly, phytochemical qualitative and chemical signaling through Gas Chromatography-mass spectrometry (GC-MS) executed the presence of flavonoids, phenols, saponins, alkaloids, terpenoids, nitrogen (N), sulpher (S), silicon (Si) containing compounds in both treated and controlled leaves that defend against Puccinia xanthii. Fascinatingly, all X. strumarium populations collected from different latitudes possess similar compositions. In interaction mechanism, plant known to omit volatile organic compounds in response to attack of natural herbivores. The leave chemical profiling suggested that the influence of fungus attack on invasive weed brought different changes in chemical infrastructure of leave and these chemicals also play a vital role in the food web. After attack of these biological control agents, plants exhibits passionate compound reprogramming within the leaf naturally that act upon in defense systems. Author summaryO_LIThe study was conducted to observe the environmental impact on the trend of insect, invasive weed and pathogens. C_LIO_LIThere was a significant dominance of gall-forming insect on invasive Xanthium weed at all locations. C_LIO_LIPuccinia xanthii infected more than 16% plantation C_LIO_LIPlant growth had significant variation at various longitudes and latitudes. C_LIO_LIThe abundance of insect was positively linked with different environmental factors and Xanthium plant. C_LIO_LIThe results of GC-MS suggested that Puccinia xanthii infected (treatment) leaves covered maximum area (%) compared to control treatments due to breakdown of the chemical compounds that proved our hypotheses that volatile organic compounds altered infrastructures of the leave chemistry that led to activeness of plant defensive chemicals resulted invasion success. C_LI

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Iqbal, M., Feng, Y. L.. 2020-01-17. Phytochemical screening, GC-MS profiling of invasive cocklebur (Xanthium strumarium)-insect-pathogen interaction and simulated volatile chemical signaling at Northeast China. https://doi.org/10.1101/2020.01.17.910240

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Impacts of Environmental Nickel and Chromium Exposure on the Blood Proteome of House Sparrows (Passer domesticus) in New Caledonia

New Caledonia holds some of the world's largest ultramafic mineral deposits, and nickel (Ni) smelting operations have created a gradient of Ni and chromium (Cr) contamination across the archipelago. Molecular impacts of Ni and Cr toxicity on wildlife remain largely unexplored. Here, we used the house sparrow (Passer domesticus) as a sentinel species to characterise the blood proteomic response to Ni and Cr exposure near the Doniambo smelter in Noumea. Blood was collected from 52 free-living sparrows across 18 sites classified by soil metal concentration. Plasma and blood cell pellet fractions were analysed by liquid chromatography-tandem mass spectrometry (LC-MS/MS). Plasma proteomics identified histidine-rich glycoprotein (HRG) as the most prominent responder, with approximately 2.1-fold elevation in exposed relative to low-exposure birds. HRG contains a conserved histidine-rich region that binds cations including divalent nickel, and paired plasma-liver analysis confirmed hepatic-driven synthesis. Blood cell pellet proteomics revealed that Ni-Cr co-exposure predominantly disrupts the nuclear compartment: histone depletion indicated chromatin collapse, NUP153 dysregulation impaired nuclear pore function, and VRK1/TRIP13 upregulation suggested DNA damage response activation coupled with mitotic checkpoint override. Concurrent RNA processing collapse (DDX17, DHX15, RBMX, ALYREF) and changes in telomere-associated proteins (TERF2IP, hnRNPA1 and VRK1) implicated disrupted genome maintenance. These findings identify HRG as a candidate plasma biomarker of Ni-Cr exposure and reveal a coordinated nuclear toxicity signature linking heavy metal contamination to DNA damage and epigenetic disruption in a free-living vertebrate.

biochemistry↗

Programmable amide bond formation using de novo ligases

Amide bond formation is of central importance in the chemical industry, underpinning the synthesis of small bioactive molecules, macrocycles, peptides and their conjugates. Conventional methods of amide synthesis rely on stoichiometric coupling agents and costly protecting group manipulations. While biocatalysis can alleviate some of these challenges, enzymes typically operate across a narrow range of substrates and their adaptation to new coupling partners requires extensive engineering. Here we show that de novo amide ligases featuring a cysteine catalytic triad can be programmed computationally to operate across diverse substrate classes with high selectivity. We first designed complementary peptide ligases to selectively functionalise either the N-terminus or a single lysine residue of a polypeptide sequence containing 36 competing lysines. Crystal structures of both ligases show excellent agreement with the designs, with structural modelling suggesting that amidation outcompetes hydrolysis because the catalytically competent geometry forms only upon acceptor binding. We then extended our approach to the synthesis of small bioactive molecules by designing stereoselective ligases that mediate a key amide bonding forming step in the synthesis of the preventative HIV therapeutic lenacapavir. These results establish de novo enzyme design as a programmable platform for achieving selective amide bond formations across a wide range of molecular targets.

biochemistry↗

De novo design of ligases for programmable site-specific protein ubiquitylation

Protein ubiquitylation regulates numerous cellular processes, but difficulties in generating site-specifically ubiquitylated proteins limit our understanding of individual modification events. In cells, ubiquitylation is mediated by an E1-E2-E3 enzyme cascade, with substrate recognition largely determined by more than 600 human E3 ligases, making it challenging to redirect ubiquitin transfer to a chosen lysine. Here we use RFdiffusion3 to design ubiquitin ligases from scratch that use a cysteine-based catalytic triad to conjugate an activated ubiquitin donor to a selected lysine in a chosen target substrate. Of 48 tested designs, 35 ubiquitylated a model peptide, with the most active ligases achieving near-quantitative ubiquitin transfer. We next challenged the approach with the homotrimeric sliding clamp proliferating cell nuclear antigen (PCNA), whose ubiquitylation at lysine (K) 164 governs DNA damage tolerance while displaying 45 off-target lysines for ubiquitination. Screening of 48 designs delivered a site-selective ligase. Incorporation of a single activity-increasing substitution and coupling to E1-dependent donor activation resulted in 90% conversion from unactivated ubiquitin, delivering higher rates and superior selectivity compared to a natural promiscuous E2. Using this cascade, we transferred di-, tri- and tetraubiquitin chains of defined length to PCNA K164 through a native isopeptide bond. These results establish de novo enzyme design as a route towards programmable, site-specific protein ubiquitylation. That a single de novo designed protein can bind both an activated ubiquitin donor and a globular target, and use a proficient catalytic machinery to selectively transfer ubiquitin to one lysine among 45, illustrates the level of functional complexity now within reach of de novo enzyme design.

biochemistry↗