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bioRxiv · 10.1101/177485

BUSCO applications from quality assessments to gene prediction and phylogenomics

Waterhouse, R. M.·Seppey, M.·Simao Neto, F. A.·Manni, M.·Ioannidis, P.·Klioutchnikov, G.·Kriventseva, E. V.·Zdobnov, E.
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Abstract

Genomics promises comprehensive surveying of genomes and metagenomes, but rapidly changing technologies and expanding data volumes make evaluation of completeness a challenging task. Technical sequencing quality metrics can be complemented by quantifying completeness in terms of the expected gene content of Benchmarking Universal Single-Copy Orthologs (BUSCO, http://busco.ezlab.org). Now in its third release, BUSCO utilities extend beyond quality control to applications in comparative genomics, gene predictor training, metagenomics, and phylogenomics.

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Waterhouse, R. M., Seppey, M., Simao Neto, F. A., Manni, M., Ioannidis, P., Klioutchnikov, G., Kriventseva, E. V., Zdobnov, E.. 2017-08-17. BUSCO applications from quality assessments to gene prediction and phylogenomics. https://doi.org/10.1101/177485

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