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bioRxiv · 10.1101/151787

A RESTful API to serve BAM file with OAuth2 compatible authorization

Delafontaine, J.·Pradervand, S.
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Abstract

SummaryBam-server is an open-source RESTful service to query slices of BAM files securely and manage their user accesses. A typical use case is the visualization of local read alignments in a web interface for variant calling diagnostic, without exposing sensitive data to unauthorized users through the network, and without moving the original - heavy - file. Bam-server follows the standard implementation of a protected resource server in the context of a typical token-based authorization protocol, supporting HMAC- and RSA-hashed signatures from an authorization server of choice.\n\nAvailabilityThe source code is available at https://github.com/chuv-ssrc/bam-server-scala, and a complete documentation can be found at http://bam-server-scala.readthedocs.io/en/latest/.\n\nContactsylvain.pradervand@chuv.ch

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Delafontaine, J., Pradervand, S.. 2017-06-19. A RESTful API to serve BAM file with OAuth2 compatible authorization. https://doi.org/10.1101/151787

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