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bioRxiv · 10.1101/147496

TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data

Silva, T. C.·Colaprico, A.·Olsen, C.·Bontempi, G.·Ceccarelli, M.·Berman, B. P.·Noushmehr, H.
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Abstract

BackgroundThe GDC (Genomic Data Commons) data portal provides users with data from cancer genomics studies. Recently, we developed the R/Bioconductor TCGAbiolinks package, which allows users to search, download and prepare cancer genomics data for integrative data analysis. The use of this package requires users to have advanced knowledge of R thus limiting the number of users.\n\nResultsTo overcome this obstacle and improve the accessibility of the package by a wider range of users, we developed TCGAbiolinksGUI that uses shiny graphical user interface (GUI) available through the R/Bioconductor package.\n\nConclusionThe TCGAbiolinksGUI package is freely available within the Bioconductor project at http://bioconductor.org/packages/TCGAbiolinksGUI/. Links to the GitHub repository, a demo version of the tool, a docker image and PDF/video tutorials are available at http://bit.do/TCGAbiolinksDocs.

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Silva, T. C., Colaprico, A., Olsen, C., Bontempi, G., Ceccarelli, M., Berman, B. P., Noushmehr, H.. 2017-06-08. TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data. https://doi.org/10.1101/147496

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