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bioRxiv · 10.1101/132001

wft4galaxy: A Workflow Tester for Galaxy

Piras, M. E.·Pireddu, L.·Zanetti, G.
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Abstract

MotivationWorkflow managers for scientific analysis provide a high-level programming platform facilitating standardization, automation, collaboration and access to sophisticated computing resources. The Galaxy workflow manager provides a prime example of this type of platform. As compositions of simpler tools, workflows effectively comprise specialized computer programs implementing often very complex analysis procedures. To date, no simple way exists to automatically test Galaxy workflows and ensure their correctness has appeared in the literature.\n\nResultsWith wft4galaxy we offer a tool to bring automated testing to Galaxy workflows, making it feasible to bring continuous integration to their development and ensuring that defects are detected promptly. wft4galaxy can be easily installed as a regular Python program or launched directly as a Docker container - the latter reducing installation effort to a minimum.\n\nAvailabilitywft4galaxy is available online at https://github.com/phnmnl/wft4galaxy under the Academic Free License v3.0.\n\nSupplementary informationSupplementary information is available at http://wft4galaxy.readthedocs.io.

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Piras, M. E., Pireddu, L., Zanetti, G.. 2017-04-28. wft4galaxy: A Workflow Tester for Galaxy. https://doi.org/10.1101/132001

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