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bioRxiv · 10.1101/122838

karyoploteR: An R/Bioconductor Package To Plot Customizable Linear Genomes Displaying Arbitrary Data

Gel, B.·Serra, E.
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Abstract

MotivationData visualization is a crucial tool for data exploration, analysis and interpretation. For the visualization of genomic data there lacks a tool to create customizable non-circular plots of whole genomes from any species.\n\nResultsWe have developed karyoploteR, an R/Bioconductor package to create linear chromosomal representations of any genome with genomic annotations and experimental data plotted along them. Plot creation process is inspired in R base graphics, with a main function creating karyoplots with no data and multiple additional functions, including custom functions written by the end-user, adding data and other graphical elements. This approach allows the creation of highly customizable plots from arbitrary data with complete freedom on data positioning and representation.\n\nAvailabilitykaryoploteR is released under Artistic-2.0 License. Source code and documentation are freely available through Bioconductor (http://www.bioconductor.org/packages/karyoploteR)\n\nContactbgel@igtp.cat

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Gel, B., Serra, E.. 2017-03-31. karyoploteR: An R/Bioconductor Package To Plot Customizable Linear Genomes Displaying Arbitrary Data. https://doi.org/10.1101/122838

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