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bioRxiv · 10.1101/120196

JfxNgs : A BAM/VCF viewer with javascript-based filtering/reformatting functionalities

Lindenbaum, P.·Karakachoff, M.·Redon, R.
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Abstract

MotivationVisualizing BAM and VCF files is a common task for biologists, but theyre missing a way to filter and to explore the details of each short-read or variation.\n\nResultsIn that context, we wrote an interactive java-based interface named JfxNgs that uses javascript snippets to filter and reformat BAM and VCF files.\n\nAvailabilityhttps://github.com/lindenb/jvarkit/blob/master/docs/JfxNgs.md\n\nContactpierre.lindenbaum@univ-nantes.fr.

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Lindenbaum, P., Karakachoff, M., Redon, R.. 2017-03-24. JfxNgs : A BAM/VCF viewer with javascript-based filtering/reformatting functionalities. https://doi.org/10.1101/120196

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