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bioRxiv · 10.1101/113357

An indicator cell assay for blood-based diagnostics

Danziger, S. A.·Miller, L. R.·Singh, K.·Whitney, G. A.·Peskind, E. R.·Li, G.·Lipshutz, R. J.·Aitchison, J. D.·Smith, J.
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Abstract

We have established proof of principle for the Indicator Cell Assay Platform (iCAP), a broadly applicable tool for blood-based diagnostics that uses specifically-selected, standardized cells as biosensors, relying on their innate ability to integrate and respond to diverse signals present in patients blood. To develop an assay, indicator cells are exposed in vitro to serum from case or control subjects and their global differential response patterns are used to train reliable, cost-effective disease classifiers based on a small number of features. In a feasibility study, the iCAP detected pre-symptomatic disease in a murine model of amyotrophic lateral sclerosis (ALS) with 94% accuracy (p-Value=3.81E-6) and correctly identified samples from a murine Huntingtons disease model as non-carriers of ALS. In a preliminary human disease assay, the iCAP detected early stage Alzheimers disease with 72% cross-validated accuracy (p-Value=3.10E-3). For both assays, iCAP features were enriched for disease-related genes, supporting the assays relevance for disease research.

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Danziger, S. A., Miller, L. R., Singh, K., Whitney, G. A., Peskind, E. R., Li, G., Lipshutz, R. J., Aitchison, J. D., Smith, J.. 2017-03-03. An indicator cell assay for blood-based diagnostics. https://doi.org/10.1101/113357

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