An annotated draft genome for Radix auricularia(Gastropoda, Mollusca)

Schell, T.; Feldmeyer, B.; Schmidt, H.; Greshake, B.; Tills, O.; Truebano, M.; Rundle, S. D.; Paule, J.; Ebersberger, I.; Pfenninger, M.

doi:10.1101/087254

bioRxiv · 10.1101/087254

An annotated draft genome for Radix auricularia(Gastropoda, Mollusca)

Schell, T.·Feldmeyer, B.·Schmidt, H.·Greshake, B.·Tills, O.·Truebano, M.·Rundle, S. D.·Paule, J.·Ebersberger, I.·Pfenninger, M.

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Abstract

Molluscs are the second most species-rich phylum in the animal kingdom, yet only eleven genomes of this group have been published so far. Here, we present the draft genome sequence of the pulmonate freshwater snail Radix auricularia. Six whole genome shotgun libraries with different layouts were sequenced. The resulting assembly comprises 4,823 scaffolds with a cumulative length of 910 Mb and an overall read coverage of 72x. The assembly contains 94.6 % of a metazoan core gene collection, indicating an almost complete coverage of the coding fraction. The discrepancy of ~690 Mb compared to the estimated genome size of R. auricularia (1.6 Gb) results from a high repeat content of 70 % mainly comprising DNA transposons. The annotation of 17,338 protein coding genes was supported by the use of publicly-available transcriptome data. This draft will serve as starting point for further genomic and population genetic research in this scientifically important phylum.

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Schell, T., Feldmeyer, B., Schmidt, H., Greshake, B., Tills, O., Truebano, M., Rundle, S. D., Paule, J., Ebersberger, I., Pfenninger, M.. 2016-11-11. An annotated draft genome for Radix auricularia(Gastropoda, Mollusca). https://doi.org/10.1101/087254

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