EXPLORE CONNECTIONS
Integrated Biomedical System
Follow the relationships that help you find your next source.
Based on 525 indexed works selected for this snapshot; the candidate window is limited. Counts describe this index, not the complete source archives. Prepared from the PostgreSQL corpus; source versions are checked before display. Snapshot 2026-11-07. Up to 32 works or names per graph.
Subjects & research connections
Connections use shared source subjects, names, places, and explicitly mentioned entities. A shared label is not evidence of a citation, experimental result, or verified species identification.
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Relationships as a list (31)
- 1. Integrated Biomedical System bioinformatics · Preprint 2. MIA-Jet: Multi-scale Identification Algorithm of Chromatin Jets
- 1. Integrated Biomedical System bioinformatics · Preprint 3. Cellular composition and the interpretation of candidate RNA readouts of trogocytosis in colorectal cancer
- 1. Integrated Biomedical System bioinformatics · Preprint 4. NeuroWeave-3D: Uncertainty-Aware Evidence Completion for Brain Tumor Segmentation with Missing MRI Modalities
- 1. Integrated Biomedical System bioinformatics · Preprint 5. Differential Gene Expression and Functional Enrichment Analysis of Breast Tumor and Normal Tissue RNA-seq Data: A Reanalysis of GEO Dataset GSE210787
- 1. Integrated Biomedical System bioinformatics · Preprint 6. Classifying tumors from broad category to hierarchical molecular subtype: an interpretable hierarchical framework for precision oncology
- 1. Integrated Biomedical System bioinformatics · Preprint 7. A comparative transcriptomic framework across kidney organoid, assembloid, and transplantation models
- 1. Integrated Biomedical System bioinformatics · Preprint 8. A trustworthy semantic knowledge network linking data-driven cell phenotypes to diseases and drugs
- 1. Integrated Biomedical System bioinformatics · Preprint 9. Computational Analysis of Antioxidant Effects on Stress Response Mechanisms in Candida albicans
- 1. Integrated Biomedical System bioinformatics · Preprint 10. SPaRTA: Spatial Reasoning in Text-to-SQL for Omics Analysis
- 1. Integrated Biomedical System bioinformatics · Preprint 11. Decision benchmarking of cryo-EM re-refinement
- 1. Integrated Biomedical System bioinformatics · Preprint 12. Reference-Guided De Novo Retrieval of 3D Chromatin Organizational Features with Representation Learning
- 1. Integrated Biomedical System bioinformatics · Preprint 13. 2D U-NET Deep Learning Architecture for Atherosclerotic Lesion Segmentation and Quantification
- 1. Integrated Biomedical System bioinformatics · Preprint 14. Decoding Cell-type Specific Gene Regulation with CellReg3D by Integrating DNA Large Language Models and 3D Genome Structure
- 1. Integrated Biomedical System bioinformatics · Preprint 15. SQANTI-evidence: isoform-resolved, evidence-tiered structural annotation of unannotated genomes from long-read RNA-seq
- 1. Integrated Biomedical System bioinformatics · Preprint 16. The Segmentome: a novel representation of the DNA methylome identified by a Bayesian HMM framework
- 1. Integrated Biomedical System bioinformatics · Preprint 17. GOParsimony: parsimonious saltation across the Gene Ontology digraph for efficient functional annotation
- 1. Integrated Biomedical System bioinformatics · Preprint 18. An end-to-end in silico framework for truth-based validation and regression testing of clinical genome sequencing pipelines, from simulated reads to reportable findings
- 1. Integrated Biomedical System bioinformatics · Preprint 19. Layer-Specific Source-Anchored Transfer Learning for Multi-Omics Survival Prediction in Younger Breast Cancer Patients
- 1. Integrated Biomedical System bioinformatics · Preprint 20. OncoSpot enables benchmarking of cancer spatial transcriptomics methods across tumor evolutionary modes
- 1. Integrated Biomedical System bioinformatics · Preprint 21. Deterministic DNA-first discovery reveals recurrent genomic architectures
- 1. Integrated Biomedical System bioinformatics · Preprint 22. Context, not contradiction: a pan-cancer framework for conforming and nonconforming co-expression programmes
- 1. Integrated Biomedical System bioinformatics · Preprint 23. BioTrajX: evaluating biological plausibility in single-cell trajectory inference
- 1. Integrated Biomedical System bioinformatics · Preprint 24. Omics-scale decoding of protein N-glycosylation using protein language model embeddings
- 1. Integrated Biomedical System bioinformatics · Preprint 25. Model-Agnostic Decomposition of the Difference in Mean Response Between Two Groups via Game-Theoretic Attribution with Minimum-Switching-Distortion Coupling
- 1. Integrated Biomedical System bioinformatics · Preprint 26. vafSOMA: Detecting cell-layer-fixed somatic mutations in plants
- 1. Integrated Biomedical System bioinformatics · Preprint 27. scPCIP: cross-species annotation of plant cell types with conserved gene programs
- 1. Integrated Biomedical System bioinformatics · Preprint 28. Spectral Adaptive Repositioning for Flow-Based Single-Cell Perturbation Modeling
- 1. Integrated Biomedical System bioinformatics · Preprint 29. Genome-scale metabolic models reveal phylogenetic conservation of amino acid fermentation-linked metabolic traits in soil bacteria
- 1. Integrated Biomedical System bioinformatics · Preprint 30. AlphaFold 3 Prediction Accuracy and Reliability across RNA Structures and Protein-RNA Interfaces
- 1. Integrated Biomedical System bioinformatics · Preprint 31. NBDC Data Tools: Building Analysis-ready Datasets From ABCD and HBCD Releases in R and Python
- 1. Integrated Biomedical System bioinformatics · Preprint 32. Disentangling Context-Specific Alzheimer's Disease Progression Signatures through an Explainable AI Framework
Citation graph
Arrows run from the citing work to its reference. Only explicit source/provider reference lists are used. Incoming links cover this candidate window; this is not a global citation count.
No supported relationships are available in this snapshot. This does not mean that no relationships exist.
Collaborator network
Shared authorship within up to 200 candidate works (1 examined); up to 32 names shown. Names are matched as supplied, without verified person disambiguation. Shared credit does not necessarily establish personal collaboration.
Drag the background to pan. Select a node to open its record. Hover or focus for the title; numbers match the list.
Relationships as a list (6)
- Darrell O. Ricke 1 shared work James Harper
- Anna Shcherbina 1 shared work Darrell O. Ricke
- Darrell O. Ricke 1 shared work Nelson Chiu
- Anna Shcherbina 1 shared work James Harper
- James Harper 1 shared work Nelson Chiu
- Anna Shcherbina 1 shared work Nelson Chiu
Publication timeline
Publication years for these 32 related works; 0 have no source publication date. This is a discovery sample, not a measure of research output or growth.
2016 · 1 work
2026 · 30 works
- Cellular composition and the interpretation of candidate RNA readouts of trogocytosis in colorectal cancer
- NeuroWeave-3D: Uncertainty-Aware Evidence Completion for Brain Tumor Segmentation with Missing MRI Modalities
- Differential Gene Expression and Functional Enrichment Analysis of Breast Tumor and Normal Tissue RNA-seq Data: A Reanalysis of GEO Dataset GSE210787
- Classifying tumors from broad category to hierarchical molecular subtype: an interpretable hierarchical framework for precision oncology
- A comparative transcriptomic framework across kidney organoid, assembloid, and transplantation models
- A trustworthy semantic knowledge network linking data-driven cell phenotypes to diseases and drugs
- Computational Analysis of Antioxidant Effects on Stress Response Mechanisms in Candida albicans
- SPaRTA: Spatial Reasoning in Text-to-SQL for Omics Analysis
- Decision benchmarking of cryo-EM re-refinement
- Reference-Guided De Novo Retrieval of 3D Chromatin Organizational Features with Representation Learning
- 2D U-NET Deep Learning Architecture for Atherosclerotic Lesion Segmentation and Quantification
- Decoding Cell-type Specific Gene Regulation with CellReg3D by Integrating DNA Large Language Models and 3D Genome Structure
- SQANTI-evidence: isoform-resolved, evidence-tiered structural annotation of unannotated genomes from long-read RNA-seq
- The Segmentome: a novel representation of the DNA methylome identified by a Bayesian HMM framework
- GOParsimony: parsimonious saltation across the Gene Ontology digraph for efficient functional annotation
- An end-to-end in silico framework for truth-based validation and regression testing of clinical genome sequencing pipelines, from simulated reads to reportable findings
- Layer-Specific Source-Anchored Transfer Learning for Multi-Omics Survival Prediction in Younger Breast Cancer Patients
- OncoSpot enables benchmarking of cancer spatial transcriptomics methods across tumor evolutionary modes
- Deterministic DNA-first discovery reveals recurrent genomic architectures
- Context, not contradiction: a pan-cancer framework for conforming and nonconforming co-expression programmes
- BioTrajX: evaluating biological plausibility in single-cell trajectory inference
- Omics-scale decoding of protein N-glycosylation using protein language model embeddings
- Model-Agnostic Decomposition of the Difference in Mean Response Between Two Groups via Game-Theoretic Attribution with Minimum-Switching-Distortion Coupling
- vafSOMA: Detecting cell-layer-fixed somatic mutations in plants
- scPCIP: cross-species annotation of plant cell types with conserved gene programs
- Spectral Adaptive Repositioning for Flow-Based Single-Cell Perturbation Modeling
- Genome-scale metabolic models reveal phylogenetic conservation of amino acid fermentation-linked metabolic traits in soil bacteria
- AlphaFold 3 Prediction Accuracy and Reliability across RNA Structures and Protein-RNA Interfaces
- NBDC Data Tools: Building Analysis-ready Datasets From ABCD and HBCD Releases in R and Python
- Disentangling Context-Specific Alzheimer's Disease Progression Signatures through an Explainable AI Framework
Semantic map
Model: all-minilm. Positions are a two-dimensional approximation of embedding similarity; proximity is not a citation or proof of agreement. Results come from the snapshot’s candidate window.
No current, compatible embeddings are available for related works in this snapshot. A semantic map appears after background embedding and snapshot generation.