@misc{indiciae4e592037f7fe, title = {Multiple versus pairwise sequence alignments for protein phylogenetics using foundation models}, author = {Alibutud, R. F. and Kumar, S.}, year = {2026}, doi = {10.64898/2026.05.26.727927}, url = {https://www.biorxiv.org/content/10.64898/2026.05.26.727927v1}, note = {Source identifier: 10.64898/2026.05.26.727927} }