@misc{indiciaef8897193c011, title = {PathogenSurveillance: an automated pipeline for population genomic analyses and pathogen identification}, author = {Foster, Z. S. L. and Sudermann, M. A. and Parada Rojas, C. H. and Blair, L. K. and Iruegas Bocardo, F. and Dhakal, U. and Weisberg, A. J. and Phan, H. and Chang, J. H. and Grunwald, N. J.}, year = {2025}, doi = {10.1101/2025.10.31.685798}, url = {https://www.biorxiv.org/content/10.1101/2025.10.31.685798v1}, note = {Source identifier: 10.1101/2025.10.31.685798} }