Search bioRxiv⌕ Search

Biology subjects

zhao, p.

Publications and source records attributed to zhao, p..

3 recordsLinked to original sources

An electron-bifurcating hydrogenase-like activity associated with mitochondrial Complex I under hypoxia in vascular plants

Abstract Molecular hydrogen (H2) evolution by higher plants under oxygen limitation was reported more than six decades ago, yet its origin, biochemical basis and physiological significance have remained unresolved. Here, we localize this activity to a mitochondrial, Complex I-associated electron-transfer system. Mitochondrial fractions from etiolated Vigna radiata hypocotyls accumulated H2 under hypoxia and mildly acidic conditions. H2 accumulation was nearly abolished by rotenone and was sensitive to perturbations of Complex II, quinone-pool turnover, terminal oxidases and protonmotive force. NADH-generating substrates and succinate-fumarate supplementation stimulated H2 accumulation, while metabolic profiling linked H2 production to succinate and NADH accumulation. Cumulative H2 production exceeded the measured NADH pool by approximately two orders of magnitude, requiring sustained NADH regeneration. These findings support a division-of-labour model involving coexisting mature Complex I and CI*, a Complex I assembly or remodeling state. TCA-cycle dehydrogenation and succinate-driven reverse electron transfer (RET) through mature Complex I replenish the matrix NADH pool, whereas CI* consumes NADH through an H2-evolving branch, regenerating NAD. This model identifies a potential conditional redox function for CI* and an electron outlet coupled to continuous NADH cycling. Unlike mammalian RET, which can generate pronounced reactive oxygen species (ROS), diversion of reducing equivalents into H2 could attenuate the corresponding ROS signature, potentially helping explain the elusive physiological evidence for plant RET. The data establish a RET-compatible supply route, not direct reverse electron flux. Structural and computational analyses support an FMN-Fe-S branched mechanism whose catalytic steps remain unverified. More broadly, Complex I assembly may not merely build the respiratory machinery; under specific physiological conditions, its intermediate states may reshape electron fate, exposing latent hydrogenase-related chemistry associated with Complex I's evolutionary ancestry.

biochemistry↗

Silencing Proline Dehydrogenases Improves Salt and Drought Tolerance in Gossypium hirsutum

Proline is a key compound that lowers cell water potential, scavenges reactive oxygen species, and stabilizes biomolecules and cell membranes, thus reducing stress-induced damage. Proline dehydrogenase (ProDH), the first rate-limiting enzyme in proline degradation, plays a crucial role in proline accumulation. We explored the role of the GhProDH gene family in regulating physiological responses to stress conditions through transcriptome, metabolome and functional analyses. Overexpression and gene silencing lines in Arabidopsis and cotton revealed that GhProDH2 plays a key role in regulating cottons tolerance to drought and salt stress. GhProDH2-4 improves cottons tolerance to drought and salt stress by engaging in carbon metabolism, glyoxylate cycle, and flavonoid metabolism pathways. These findings highlight the potential role of GhProDH2-4 to improve cotton stress resistance by genetically modifying pathways involved in proline biosynthesis and degradation.

molecular biology↗

BGMDB: A curated database linking gut microbiota dysbiosis to brain disorders

The gut microbiota plays a pivotal role in human health by modulating physiological homeostasis and influencing the pathogenesis of various diseases. Recent studies have underscored the close relationship between neurotransmitters, which act as communication mediators between the gut and brain, and the development and treatment of multiple brain disorders. Despite these advances, the intricate interactions between gut microbiota and brain diseases remain largely unexplored in the extensive biomedical literature. There is a notable absence of a structured database focusing on gut microbiota-brain disease associations. Introducing BGMDB (Brain Disease Gut Microbiota Database), a meticulously curated database designed to provide experimentally supported connections between gut microbiota and brain diseases. The current version of BGMDB extensively covers 1,419 associations involving 609 gut microbiota and 43 brain diseases, including 184 specific association triplets linking brain diseases, neurotransmitters, and gut microbiota among six neurotransmitters. Noteworthy is that BGMDB integrates gene data related to gut microbiota from the gutMGene database. Brain region and disease microbial networks are introduced to investigate potential common genetic relationships between brain diseases and brain region changes. Each entry in BGMDB offers detailed insights into specific associations, including the particular brain disease implicated, the involved gut microbiota, neurotransmitter, and a concise description of the relationship supported by relevant literature references. To facilitate easier access to relevant information for specific brain diseases, BGMDB provides enhanced graphical query options to address various biologically pertinent inquiries. Additionally, a user-friendly interface allows users to browse, retrieve, and download entries conveniently. BGMDB serves as a valuable resource for investigating microbes associated with human brain disorders. Access BGMDB through http://43.139.38.118:8080/demo02/.

bioinformatics↗