Biology subjects

van Oevelen, D.

Publications and source records attributed to van Oevelen, D..

6 recordsLinked to original sources

bioRxiv2026

Taxon-specific differences in C and N cycling and metabolic activity of intertidal organisms: Part B - Long-term processes

Tidal flats cover less than 1% of the surface of our planet, but they provide important ecosystem functions and services, like carbon sequestration and nutrient (re-)mineralization, primary, sec-ondary, and food production, and habitats for a variety of species. Despite their importance, they are threatened by environmental stressors and anthropogenic impacts. Hence, a better under-standing of the interaction between macrozoobenthos, their metabolic activity, and their contri-bution to carbon and nitrogen cycling is important. Therefore, we conducted in-situ pulse-chase tracer experiments at a Pacific oyster (Magallana gigas) reef in the Eastern Scheldt (Southwest Dutch Delta, Netherlands) in summer and autumn 2020. During these experiments, we provided the submerged benthic community with 13C and 15N-enriched bacterioplankton and incubated it in seawater enriched in 1% deuterium oxide (2H2O) for one tidal cycle (~9 h), before the benthic community was kept at in situ conditions for another 14 d. Our aim was (1) to assess seasonal variations in 13C and 15N processing by macrozoobenthos, (2) to evaluate potential life-stage de-pendent differences in 2H uptake - a proxy for metabolic activity, and (3) to identify the macro-zoobenthos taxon which had the highest metabolic turnover rate (MTR). In summer, most bacte-rioplankton-derived 13C- and 15N was taken up by sponges (Halichondria panicea), limpets (Crepidula fornicata), and clams (Ruditapes philippinarum), whereas in autumn, H. panicea, C. fornicata and the sponge Hymeniacidon perlevis dominated 13C and 15N incorporation. Statisti-cally significant differences in 2H uptake between life stages (juvenile/ small vs. adult) was de-tected in Malacostraca (i.e., Rhithropanopeus harrisii), but not in Polychaeta or Bivalvia. There-fore, this difference between taxonomic classes might be linked to mold-intermolt periods. Sea-sonal differences in MTR of H. panicea and M. gigas (i.e., the species with the highest MTRs in summer and autumn) might be linked to seasonal environmental variability, such as temperature and food availability.

ecology↗

bioRxiv2026

Range expansion of the invasive barnacle Balanus glandula into the Wadden Sea, its habitat and parasite fauna compared to established barnacle species

The impact of invasive species on marine ecosystems is rapidly increasing, where they often outcompete native species in the absence of natural enemies. The parasite release hypothesis states that the success of invasive species relates partly to the loss of natural parasites during introduction and lower susceptibility to native parasites. Barnacles are highly successful invaders due to broad environmental tolerance and dispersal via shipping, but whether parasite release also participates in this success remains unknown. In this study, we analyse parasite infection patterns in native and invasive barnacles in the Wadden Sea by surveying communities across tidal zones. Additionally, year-round molecular monitoring of larval stages and a literature review were used to track the distribution of the invasive Pacific barnacle Balanus glandula in Europe and document its appearance in the Wadden Sea. The long-established invasive Austrominius modestus dominated the high and middle intertidal zone, whereas native species (Balanus crenatus and Amphibalanus improvisus) prevailed in lower zones. Native and invasive barnacles differed in parasite infection frequency (mostly cestodes and trematodes). The native Semibalanus balanoides had the highest prevalence (27%), followed by the invasive A. modestus (11%), and no infections were found in B. glandula. Lower parasite prevalence in invasive barnacles is consistent with the hypothesis that parasite release supports invasion success. In the absence of competent parasites, B. glandula could impact native barnacles through competition. Continued monitoring of B. glandula is recommended to track its distribution, interactions with native species, and parasite acquisition, providing further insight into the parasite release hypothesis.

ecology↗

bioRxiv2026

Optimizing automated classification for zooplankton in coastal conditions: the impact of model selection, imaging instruments, and colour information

The advancement in deep learning techniques has made Convolutional Neural Networks (CNNs) a powerful tool for the fully automated classification of zooplankton images. In this study, we systematically investigate how network selection, colour information and differences in imaging instruments affect the classification of zooplankton images by comparing multiple state-of-the-art CNNs on images of zooplankton and marine snow from the in situ Continuous Particle Imaging and Classification Sensor (CPICS), Video Plankton Recorder (VPR), In Situ Ichtyoplankton Imaging System (ISIIS), and the on-board Plankton Imager (Pi-10). With differences between models of 7.8 to 19% in F1-score, we find that model selection strongly affects the classification performance, with EfficientNetV2S showing the most reliable overall performance. Moreover, differences between model architectures are largest for the least abundant classes (<100 labeled images), which implies that when these are present, careful model selection is most beneficial. The high image quality of the Pi-10 strongly increases the performance for the least abundant classes compared to the other instruments. In addition, we find a significant correlation (r = 0.597) between ImageNet the performance and F1-score on zooplankton images, which implies that more generally, a model that performs well on ImageNet will perform well for zooplankton classification. Colour information increases the F1-score of the best performing classifier with 2.8%, but provides a stronger benefit (25% F1-score) for classes with <100 images. The overall performance increase of colour information is less than expected and questions the advantage of recording colour information for zooplankton.

bioinformatics↗

bioRxiv2026

Taxon-specific differences in C and N cycling and metabolic activity of intertidal organisms: Part A - Short-term processes

European tidal flats that host non-native Magallana gigas reefs contribute to several ecosystem functions. Among others, they provide a habitat for a large variety of associated fauna. However, we often lack detailed information about any trophic interactions of the associated macrozoobenthos species with the oysters, and about their role in the carbon and nutrient cycle. Therefore, we performed ex-situ pulse-chase tracer experiments in the Eastern Scheldt (Southwest Dutch Delta, Netherlands) in summer and autumn 2020, where we fed M. gigas and their associated fauna 13C- and 15N-enriched bacterioplankton while the macrozoobenthos was incubated in water containing deuterium oxide (2H2O; enrichment: 1 - 2.5%). The aim was (1) to assess differences in short-term (<12h) processing of bacterioplankton in summer and autumn, and (2) to study differences in 2H incorporation - a proxy for metabolic activity - of M. gigas and its associated fauna in summer and autumn. In summer, all macrozoobenthos species combined consumed significantly less bacterioplankton-derived 13C and 15N than in autumn, while all macrozoobenthos species combined incorporated comparable amounts of 2H into their tissue in both seasons. Most bacterioplankton-derived 13C and 15N was taken up by sponges (Halichondria panicea, Hymeniacidon perlevis), crabs (Carcinus maenas, Eriocheir sinensis, Rhithropanopeus harrisii), and limpets (Crepidula fornicata). Most 2H was taken up by crabs (C. maenas, E. sinensis), sponges (H. perlevis), and snails (Littorina littorea), implying that these species were the most metabolically active ones. Overall, the metabolic activity was linked to feeding activity in summer 2020, whereas in autumn 2020, the link was weaker and the most metabolically active species were not necessarily the species that had incorporated most 13C and/or 15N.

ecology↗

bioRxiv2023

Deconvolving feeding niches and strategies of abyssal holothurians from their stable isotope, amino acid, and fatty acid composition

Holothurians are the dominant megabenthic deposit feeders in the Peru Basin (South-East Pacific) and feed to various degrees of selectively on the heterogenous pool of sedimentary detritus, but diet preferences for most holothurian species are unknown. This study reconstructs the diets of 13 holothurian species of the orders Elasipodida, Holothuriida, and Synallactida, from bulk stable isotope analyses ({delta}13C, {delta}15N) of holothurian body walls and guts, gut contents, and feces that were combined with compound-specific stable isotope analyses of amino acids, phospholipid-derived fatty acids, and neutral lipid-derived fatty acids in the body wall. Fatty acid concentrations showed high levels of storage lipids, an likely adaption to limited food supply to abyssal plains. Amino acid {delta}15N isotope values allowed estimating trophic levels of holothurian species and calculating heterotrophic re-synthesis of amino acids. Fatty acids served as trophic markers for feeding on diatom- and dinoflagellate derived phytodetritus, bacteria, Foraminifera, and detritus containing the PUFA C22:1{omega}9-cis. Several holothurian species seemed to be secondary consumers of detritus, while bacteria in their guts were primary consumers of this detritus. A Sorensen-Dice coefficient based cluster analysis using data of trophic levels, levels of heterotrophic re-synthesis of amino acids, feeding selectivity, and food sources/ diet suggested three trophic groups, characterized by different trophic levels. We show that this multi-biomarker driven approach allows to deconvolve trophic niches and feeding selectivity in one of the most challenging environments on earth and to identify dependence of deep-sea species to organic matter inputs that vary with season and/or climate.

zoology↗

bioRxiv2021

Polymetallic nodules are essential for food-web integrity of a prospective deep-seabed mining area in Pacific abyssal plains

Polymetallic nodule fields provide hard substrate for sessile organisms on the abyssal seafloor between 3,000 and 6,000 m water depth. Deep-seabed mining targets these mineral-rich nodules and will likely modify the consumer-resource (trophic) and substrate-providing (non-trophic) interactions within the abyssal food web. However, the importance of nodules and their associated sessile fauna in supporting food-web integrity remains unclear. Here, we use seafloor imagery and published literature to develop highly-resolved trophic and non-trophic interaction webs for the Clarion-Clipperton Fracture Zone (CCZ, central Pacific Ocean) and the Peru Basin (PB, south-east Pacific Ocean) and to assess how nodule removal will modify these networks. The CCZ interaction web included 1,028 compartments connected with 59,793 links and the PB interaction web consisted of 342 compartments and 8,044 links. We show that knock-down effects of nodule removal resulted in a 17.9% (CCZ) to 20.8% (PB) loss of all compartments and 22.8% (PB) to 30.6% (CCZ) loss of network links. Subsequent analysis identified stalked glass sponges living attached to the nodules as key structural species that supported a high diversity of associated fauna. We conclude that polymetallic nodules are critical for food-web integrity and that their absence will likely result in reduced local benthic biodiversity.

ecology↗