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Biology subjects

kumar, r.

Publications and source records attributed to kumar, r..

2 recordsLinked to original sources

Identification of Iron Deficiency-Induced Chlorosis Tolerant Lines from Wild Rice Germplasm

The cultivation of transplanted rice has led to depletion of groundwater levels in many parts of the world. Direct-seeded rice under aerobic conditions is an alternative production technology that requires much less water. However, under aerobic conditions, iron in the soil is oxidized from ferric to ferrous, which is not easily available for rice, resulting in iron deficiency-induced chlorosis (IDIC) and a drastic reduction in seed yield. Cultivated rice genotypes have limited variations for IDIC tolerance, therefore, wild Oryza germplasm could be a better source for IDIC tolerance. In this study, 313 Oryza accessions were evaluated for IDIC tolerance at the tillering stage under aerobic conditions using IDIC rating, SPAD value, and iron content in leaves. Based on these parameters, twenty IDIC tolerant lines were selected. These 20 lines exhibited no chlorosis, high SPAD values, and iron content, while 8 cultivated controls showed mild to high chlorosis symptoms and low SPAD and iron content. In a subsequent year, the selected lines were evaluated again to confirm their tolerance, and they exhibited similar levels of tolerance. These accessions may be useful for developing IDIC-tolerant cultivars for aerobic rice cultivation, and future study to understand the molecular mechanism of IDIC tolerance in rice.

plant biology↗

Identification of Differentially Expressed Genes in Wheat NILs in Response to Leaf 1 Rust Infection using In Silico Analysis

In this study, the molecular basis of leaf rust resistance was investigated by examining the differential gene expression of wheat cultivar Thatcher, both with and without a leaf rust resistance gene, in response to rust infection. unigenes/ESTs databases were utilized belonging to three near-isogenic lines (NILs) of Thatcher, including Thatcher, Thatcher + Lr10, and Thatcher + Lr1, to identify differentially expressed unigenes (DEUs) in response to leaf rust. Sixty-eight DEUs were identified using a data mining tool called Digital Differential Display (DDD). Among these DEUs were specific unigenes associated with Lr1 and/or Lr10-mediated resistance, as well as unigenes expressed exclusively in compatible interactions. Our results suggest that photosynthesis, lignin, and antifungal proteins play a role in the leaf rust resistance mechanism, as indicated by the overexpression of Ribulose-1,5-bisphosphate carboxylase/oxygenase, caffeic acid O-methyltransferase, and Glutathione S-transferase unigenes, respectively. Our findings demonstrate both common and distinctive genetic pathways involved in rust resistance in the Lr1 and Lr10 NILs. The expression of most DEUs was found to be high in leaves, moderate in sheath, stem, and inflorescence, and low in seed, root, flower, crown, callus, and cell culture, indicating their role in leaf rust. Using high-throughput microarray gene expression data, a subset of DEUs was validated, and as a result, eleven unigenes were mapped to deletion bins on individual wheat chromosomes. These key genes may be used as molecular markers for genome editing, which could facilitate the development of leaf rust-resistant wheat cultivars.

plant biology↗