Search bioRxiv⌕ Search

Biology subjects

in 't Zandt, M.

Publications and source records attributed to in 't Zandt, M..

2 recordsLinked to original sources

Temperature and precipitation interactively shape the plant microbiome by regulating the start of the growing season

Climate change is altering associations between plants and soil microbiota, threatening ecosystem functioning and stability. Predicting these effects requires understanding how concomitant changes in temperature and precipitation influence plant-soil microbiota associations. We identify the pathways via which temperature and precipitation shape prokaryote and fungal rhizosphere and root-associated communities of the perennial grass Festuca rubra in cold-climate ecosystems. We found that interactive effects of temperature and precipitation are key in shaping plant-soil microbiota associations, with the start of the growing season as a critical mediating factor. Specifically, the start of the growing season is advanced by increasing temperature, but delayed by increasing precipitation. This interactive pathway particularly shaped rhizosphere organic matter degrading microbiota, and root-associated plant pathogen and beneficial microbiota. We conclude that understanding local temperature, precipitation, and seasonal changes is crucial to accurately predict how the unique plant-microbiota interactions shaping cold-climate ecosystems are evolving with the ongoing change in climate.

ecology↗

Decrease in Microbial Diversity Along a Pollution Gradient in Citarum River Sediment

Pollution of water resources is a major risk to human health and water quality throughout the world. Here, we studied the effect of river pollution on the microbial community composition in the Citarum River Basin, West Java, Indonesia. Sediment was collected at six sampling points along a gradient of pollution, from the pristine source of the river to the heavily polluted downstream site in the densely populated urban area of Bandung. After DNA extraction, microbial diversity and potential for nitrogen cycling were analyzed based on 16S rRNA gene amplicon sequencing and metagenomics. Comparing the pristine sediment to the polluted site showed a lower microbial diversity and higher dominance of anaerobic processes than at the polluted site. The most dominant phylum within the Bacteria were the Proteobacteria, which shifted from Beta- and Deltaproteobacteria in the pristine site to Alpha- and Gammaproteobacteria in the polluted sediment. With pollution Actinobacteria, Bacteroidetes, and Firmicutes increased in relative abundance. Relative high abundance of Soil Crenarchaeotic group was found in all sample sites, whilst the methanogenic archaea became more abundant with increased pollution and anaerobicity. The study of the nitrogen cycling potential revealed that ammonium oxidation and denitrification appeared to be abundant processes in the pristine site, whereas ammonification seemed to be more important in the polluted site. Increased water treatment would restore water quality and microbial diversity in Citarum river sediments.

microbiology↗