Biology subjects

Zuber, M.

Publications and source records attributed to Zuber, M..

5 recordsLinked to original sources

bioRxiv2026

TBX3 is required for the differentiation of a subset of retinal ganglion and cone photoreceptor cells

Retinogenesis is a key step driving the formation of the neurons that later coordinate angiogenesis in the retina. Understanding these complex interactions requires dissecting apart its cellular and molecular drivers. To tease apart the molecular links coupling retinogenesis to vascular development, we utilized conditional knockout mouse models to selectively delete the transcription factor T-box 3 (Tbx3) in 1) astrocytes, 2) postnatal retinal ganglion cells (RGCs), or 3) retinal progenitors. We demonstrate that the hypovascular retina phenotype observed upon Tbx3 loss most likely stems from a disruption of early retinogenesis. Embryonic analyses revealed that TBX3 is required during a critical retinogenic window coinciding with ATOH7 activity. While ATOH7+ progenitors are more abundant in Tbx3 mutants, the expression of key RGC and cone precursor factors (including TBX5, RXRgamma, ISL1/2, POU4F2, SHH, LHX4 and OTX2) is severely diminished, halting proper RGC and cone differentiation. Utilizing birthdating experiments and developmental immunostaining, we establish TBX3 as a novel upstream regulator of RGC and cone photoreceptor specification. Because the degeneration of RGCs is the definitive hallmark of diseases like glaucoma, identifying TBX3 as a driver of early RGC formation positions it as a promising new candidate biomarker for early-stage glaucoma diagnosis and potentially therapeutic targeting.

developmental biology↗

bioRxiv2026

Next-generation insect digitization: combining phenomics and genomics by subsequent synchrotron X-ray imaging and DNA sequencing

Recent technological advances allow for the large-scale acquisition of genetic and morphological data: high-throughput sequencing has transformed the field of genomics while synchrotron X-ray microtomography enables rapid, noninvasive 3D imaging. However, integrating these approaches for the same specimens is challenging because X-rays can fragment DNA, and DNA extraction damages internal morphology, particularly relevant for small bodied organisms, such as insects. We systematically tested multiple extraction protocols and irradiation conditions across three model insect species. We irradiated more than 1,000 specimens under varying conditions and tested DNA quality through DNA barcoding and UCE sequencing. Our results demonstrate that high-quality DNA and high-resolution tomograms can be obtained from the same individuals, provided that the parameters are carefully optimized and rapid SR-CT scanning precedes DNA extraction. In this respect, our findings establish practical guidelines for combining genomics and phenomics, paving the way for comprehensive integrative digitization of biodiversity.

genetics↗

bioRxiv2026

Evolutionary diversification of the biological screw joint in weevils

Complex biomechanical innovations are often treated as discrete evolutionary breakthroughs, yet their diversification within large radiations remains poorly understood. Beetle leg joints provide a striking example: some weevils possess screw-like coxa-trochanteral articulations in which rotation and axial displacement are mechanically coupled, resembling engineered screw-and-nut mechanisms. Whether these joints represent isolated mechanical extremes, discrete adaptive types or part of a broader continuum of phenotypic variation has remained unknown. Here we combine synchrotron X-ray microtomography, landmark-free atlas-based morphometrics, quantitative functional morphology and phylogenetic comparative analyses to examine the mesocoxa-trochanteral joint in 68 specimens representing seven sampled family-level groups across early-diverging and derived weevil lineages. We show that screw joint evolution combines continuous variation in trochanteral shape with a restricted set of mechanically plausible joint-character combinations, rather than forming sharply separated morphological classes. True screw-and-nut joints are not confined to a distinct region of morphospace, indicating that overall form and mechanical configuration are not necessarily coupled. The occurrence of this configuration in the early diverging Caridae shows that it is not restricted to more derived families. Three-dimensional helix fitting revealed a mosaic geometry, with winding angle showing the clearest relationship with overall shape and joint architecture, whereas axial pitch varied largely independently of shape, size and lineage. Together, these patterns show that screw joint components diversified with different degrees of evolutionary integration. These results recast the weevil screw joint from a singular biomechanical curiosity into a diversified evolutionary system. They suggest that complex functional structures can evolve through the gradual recombination and differential persistence of structurally constrained and evolutionary flexible components, rather than through a single shift from simple to fully specialized designs.

zoology↗

bioRxiv2025

High-throughput phenomics of global ant biodiversity

The big data era in biology is underway, but the study of organismal form has been slow to capitalize on advances in imaging and computation. Modern imaging can digitize whole organisms, but low throughput has limited the effort to document morphological diversity. Within the open science initiative Antscan, we applied high-throughput synchrotron X-ray microtomography to capture phenotypes across a diverse and ecologically dominant insect group -- ants. We provide 2193 whole-body 3D ant datasets from 792 species to broadly cover the ant phylogeny with a global scope, also pairing phenomic data with genome sequencing projects. Scans acquired with standardized parameters facilitate automated analysis and free access to data can broaden the audience and incentivize methods development. Antscan presents a scalable approach to create libraries of diverse anatomies, heralding a new era of studies on the evolution, structure, and function of organismal phenotypes.

zoology↗

bioRxiv2021

Morphological determinants of bite force capacity in insects: a biomechanical analysis of polymorphous leaf-cutter ants

The extraordinary success of social insects is partially based on division of labour, i. e. individuals exclusively or preferentially perform specific tasks. Task-preference may correlate with morphological adaptations so implying task-specialisation, but the extent of such specialisation can be difficult to determine. Here, we demonstrate how the physical foundation of some tasks can be leveraged to quantitatively link morphology and performance. We study the allometry of bite force capacity in Atta vollenweideri leaf-cutter ants, polymorphic insects in which the mechanical processing of plant material is a key aspect of the behavioural portfolio. Through a morphometric analysis of tomographic scans, we show that the bite force capacity of the heaviest colony workers is twice as large as predicted by isometry. This disproportionate boost is predominantly achieved through increased investment in muscle volume; geometrical parameters such as mechanical advantage, fibre length or pennation angle are likely constrained by the need to maintain a constant mandibular opening range. We analyse this preference for an increase in size-specific muscle volume and the adaptations in internal and external head anatomy required to accommodate it with simple geometric and physical models, so providing a quantitative understanding of the functional anatomy of the musculoskeletal bite apparatus in insects.

evolutionary biology↗