Biology subjects

Zorn, J.

Publications and source records attributed to Zorn, J..

3 recordsLinked to original sources

bioRxiv2026

A Method to Analyze Low-Quality Archaic Human Genomes and its Application to the Teshik-Tash 1 Neandertal

The Teshik-Tash 1 child whose remains were found in Uzbekistan represents the southeastern-most extent of the known Neandertal range, providing an important link with the better studied Caucasus and Altai Mountain ranges. However, due to poor DNA preservation, studying the genetics of Teshik Tash 1 has remained elusive. Here we present analyses of the nuclear DNA from the Teshik-Tash 1, from extracts that are highly contaminated with present-day human DNA. To achieve this, we developed a new computational method, admixslug, that jointly models contamination and population relationships, in order to infer the relationship of a target individual from which only low-quality nuclear DNA is available, to high-quality archaic human genomes. After validating admixslug, we show that Teshik-Tash 1 is genetically more similar to later Neandertals from Western Eurasia than to older Neandertals from the Altai Mountains. We estimate that Teshik-Tash 1 split from the Western Eurasian lineage between 80,000 and 100,000 years ago. Despite the geographical proximity of Teshik-Tash 1 to the Denisovan range, we find no evidence for Denisovan ancestry in his genome. Our results demonstrate that admixslug enables the study of archaic human specimens in cases where DNA preservation was previously considered too poor for population genetic analyses.

genetics↗

bioRxiv2026

Nondual mindfulness meditation alters self representation and brain connectome in expert meditators

Nonduality is a foundational but conceptually elusive notion across several contemplative traditions. Nondual traditions challenge the assumption that a subject-object structure characteristic of ordinary experience is an intrinsic feature of conscious awareness. However, little remains known about the neurocognitive mechanisms associated with such experiential state. Here, we investigated how Open Presence (OP) meditation, a form of non-dual mindfulness practice, modulates bodily self-representation and large-scale brain functional organization. We combined the Full-Body Illusion Experience (FBIE), a virtual reality paradigm manipulating bodily self-processing, with resting-state functional connectivity gradient analyses in expert meditators (>10,000 hours of practice) and meditation novices. We hypothesized that OP would attenuate bodily self susceptibility as measured by FBIE and increase large-scale integration of functional brain networks, consistent with prior findings linking reduced self-boundaries and ego-dissolution to increased connectome integration. Seventy-five participants (28 experts, 47 novices) underwent fMRI scanning during OP meditation. Brain network organization was assessed using connectivity gradients and network dispersion/ eccentricity metrics. Group differences were evaluated using bootstrap statistics and support vector classification. Compared with novices, expert practitioners showed reduced global network eccentricity during OP, particularly within dorsal attention, ventral attention, and frontoparietal networks, suggesting greater large-scale integration of functional networks. These neural patterns were positively correlated with FBIE self-report measures and negatively with cognitive defusion scores, a construct thought to reflect reduced self-grasping toward thoughts and mental contents. Together, these findings suggest that nondual meditation is associated with alterations in self-representation and increased large-scale functional integration, providing candidate neural markers of nondual awareness.

neuroscience↗

bioRxiv2023

Exploring the embodied mind: functional connectome fingerprinting of meditation expertise

BACKGROUNDShort mindfulness-based interventions have gained traction in research due to their positive impact on well-being, cognition, and clinical symptoms across various settings. However, these short-term trainings are viewed as preliminary steps within a more extensive transformative path, presumably leading to long-lasting trait changes. Despite this, little is still known about the brain correlates of these meditation traits. METHODTo address this gap, we investigated the neural correlates of meditation expertise in long-term Buddhist practitioners, comparing the large-scale brain functional connectivity of 28 expert meditators with 47 matched novices. Our hypothesis posited that meditation expertise would be associated with specific and enduring patterns of functional connectivity present during both meditative (open monitoring/open presence and loving-kindness compassion meditations) and non-meditative resting states, as measured by connectivity gradients. RESULTSApplying a support vector classifier to states not included in training, we successfully decoded expertise as a trait, demonstrating its non-state-dependent nature. The signature of expertise was further characterized by an increased integration of large-scale brain networks, including the dorsal and ventral attention, limbic, frontoparietal and somatomotor networks. The latter correlated with a higher ability to create psychological distance from thoughts and emotions. CONCLUSIONSuch heightened integration of bodily maps with affective and attentional networks in meditation experts could point toward a signature of the embodied cognition cultivated in these contemplative practices.

neuroscience↗