Biology subjects

Zimmer, E. R.

Publications and source records attributed to Zimmer, E. R..

4 recordsLinked to original sources

bioRxiv2026

Sources of Variability in Normative Cerebral FDG-PET imaging

PurposeQuantitative interpretation of brain [{superscript 1}F]FDG-PET increasingly relies on comparisons with normative datasets. However, normative values may be influenced by technical and biological factors, limiting their generalizability. We investigated the effects of scanner manufacturer, reference region, age, and sex on regional [{superscript 1}F]FDG uptake in cognitively normal (CN) adults and generated covariate-adjusted normative reference data. MethodsA total of 449 CN participants from the Alzheimers Disease Neuroimaging Initiative (ADNI) were included. Regional SUVr were calculated using three reference regions (whole cerebellum, pons, cortical gray matter) and converted to Z-scores. Linear regression models were used to estimate standardized regression coefficients ({beta}), and 10-fold cross-validation was performed to quantify the out- of-sample predictive contribution of each covariate using incremental explained variance ({Delta}R{superscript 2}). ResultsScanner manufacturer introduced large, spatially structured biases. Compared with Siemens systems, GE and Philips scanners yielded lower Z-scores in frontal and medial temporal regions, with effect sizes approaching one standard deviation in selected regions ({beta} up to -0.85). Age showed region- specific associations with subcortical nuclei, medial temporal structures, and the posterior cingulate cortex, and was the strongest biological predictor in cross-validation ({Delta}R{superscript 2}{approx}0.11). Sex effects were negligible ({Delta}R{superscript 2}<0.001). Cortical gray matter normalization minimized biological and technical confounding, and the AD meta-ROI demonstrated high robustness across manufacturers and normalization strategies. ConclusionScanner manufacturer and age are the major sources of variance in brain [{superscript 1}F]FDG-PET quantification in CN subjects. Cortical gray matter provides the most stable reference region and supports harmonized, covariate-adjusted normative datasets for clinical and research applications.

neuroscience↗

bioRxiv2023

Short-term consumption of ultra-processed semi-synthetic diets impairs the sense of smell and brain metabolism in mice

The prevalence of highly-palatable, ultra-processed food in our modern diet has exacerbated obesity rates and contributed to a global health crisis. While accumulating evidence suggests that chronic consumption of ultra-processed semi-synthetic food is detrimental to sensory and neural physiology, it is unclear whether its short-term intake has adverse effects. Here, we assessed how short-term consumption (<2 months) of three ultra-processed diets (one grain-based diet, and two semi-synthetic) influence olfaction and brain metabolism in mice. Our results demonstrate that short-term consumption of semi-synthetic diets, regardless of macronutrient composition, adversely affect odor-guided behaviors, physiological responses to odorants, transcriptional profiles in the olfactory mucosa and brain regions, and brain glucose metabolism and mitochondrial respiration. These findings reveal that even short periods of ultra-processed semi-synthetic food consumption are sufficient to cause early olfactory and brain abnormalities, which has the potential to alter food choices and influence the risk of developing metabolic disease.

neuroscience↗

bioRxiv2022

Hippocampal GFAP-positive astrocyte responses to amyloid and tau pathologies

IntroductionIn Alzheimers disease clinical research, glial fibrillary acidic protein (GFAP) released into the cerebrospinal fluid and blood is widely measured and perceived as a biomarker of reactive astrogliosis. However, it was demonstrated that GFAP levels differ in individuals presenting with amyloid-{beta} (A{beta}) or tau pathology. The molecular underpinnings behind this specificity are unexplored. Here we investigated biomarker and transcriptomic associations of GFAP-positive astrocytes with A{beta} and tau pathologies in humans and mouse models. MethodsWe studied 90 individuals with plasma GFAP, A{beta}- and Tau-PET to investigate the association between biomarkers. Then, transcriptomic analysis in hippocampal GFAP-positive astrocytes isolated from mouse models presenting A{beta} (PS2APP) or tau (P301S) pathologies was applied to explore differentially expressed genes (DEGs), Gene Ontology processes, and protein-protein interaction networks associated with each phenotype. ResultsIn humans, we found that plasma GFAP associates with A{beta} but not tau pathology. Unveiling the unique nature of GFAP-positive astrocytic responses to A{beta} or tau pathology, mouse transcriptomics showed scarce overlap of DEGs between the A{beta} and tau mouse models, While A{beta} GFAP-positive astrocytes were overrepresented with genes associated with proteostasis and exocytosis-related processes, tau hippocampal GFAP-positive astrocytes presented greater abnormalities in functions related to DNA/RNA processing and cytoskeleton dynamics. ConclusionOur results offer insights into A{beta}- and tau-driven specific signatures in GFAP-positive astrocytes. Characterizing how different underlying pathologies distinctly influence astrocyte responses is critical for the biological interpretation of astrocyte-related biomarker and suggests the need to develop context-specific astrocyte targets to study AD. FundingThis study was supported by Instituto Serrapilheira, Alzheimers Association, CAPES, CNPq and FAPERGS.

neuroscience↗

bioRxiv2021

Stable brain PET metabolic networks using a multiple sampling scheme

The human brains interregional communication is vital for its proper functioning. A promising direction for investigating how these regions communicate relies on the assumption that the brain is a complex network. In this context, images derived from positron emission tomography (PET) have been proposed as a potential source for understanding brain networks. However, such networks are often assembled via direct computation of inter-subject correlations, neglecting variabilities between subjects and jeopardizing the construction of group representative networks. Here, we used [18F]FDG-PET data from 1027 individuals at different syndromal stages (352 CU, 621 MCI and 234 AD) to develop a novel method for constructing stable (i.e. resilient to spurious data points) metabolic brain networks. Our multiple sampling (MS) scheme generates brain networks with higher stability when compared to the conventional approach. In addition, the proposed method is robust to imbalanced datasets and requires 50% fewer subjects to achieve stability than the conventional approach. Our method has the potential to considerably boost PET data reutilization and advance our understating of human brain network patterns in health and disease.

neuroscience↗