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Biology subjects

Zhuge, C.

Publications and source records attributed to Zhuge, C..

2 recordsLinked to original sources

Heterogeneous immune recovery after viral response through a dynamical model of feedback-driven persistence and clearance

Viral infections trigger complex immune responses with heterogeneous outcomes shaped by nonlinear feedbacks. An ordinary differential equation model is developed to investigate immune response dynamics during viral infection, incorporating six modules: viral load, innate immunity, cellular immunity, humoral immunity, immune suppression, and IL-6 levels. Bifurcation analysis reveals that under continuous viral exposure, when viral clearance rate and intrinsic viral death rate satisfy specific conditions, the system exhibits up to five stable equilibria. This indicates that different health and disease states may coexist depending on initial conditions, while severe inflammation mainly arises from strong activation of cellular immunity, highlighting the complexity of immune responses. Simulations of finite-time viral exposure demonstrate multi-timescale recovery characteristics: viral load and IL-6 levels decline rapidly, whereas humoral immune activation and immunosuppression show delayed and sustained patterns. Furthermore, analysis of infectious period and disease duration also indicates that during transition from early acute response to chronic disease, viral replication rate plays a critical role, while immune response intensity is sensitive to both viral clearance and immune self-activation. Subsystem analysis identifies the three-component subsystem of viral load, innate immunity, and cellular immunity as core drivers of bistability and oscillations, while humoral immunity, immune suppression, and IL-6 primarily modulate response amplitude and timing. This work establishes a theoretical framework for analyzing immune response and chronic risks through feedback dynamical modelling, providing insights for intervention strategies.

systems biology↗

Conditional success of adaptive therapy: the role of treatment-pausing thresholds revealed by mathematical modeling

Adaptive therapy improves cancer treatment by controlling the competition between sensitive and resistant cells through treatment holidays. This study highlights the critical role of treatmentholiday thresholds in adaptive therapy for tumors composed of drug-sensitive and resistant cells. Using a Lotka-Volterra model, adaptive therapy outcomes are compared with maximum tolerated dose therapy and intermittent therapy outcomes, showing that adaptive therapy success depends critically on the threshold for pausing and resuming treatment and on competitive interactions between cell populations. Three comparison scenarios between adaptive therapy and other therapies emerge: uniform-decline where adaptive therapy underperforms regardless of threshold, conditional-improve where efficacy requires threshold optimization, and uniform-improve where adaptive therapy consistently outperforms alternatives. Tumor composition including initial burden and resistant cell proportion influences outcomes. Threshold adjustments enable adaptive therapy to suppress resistant subclones while preserving sensitive cells, extending progression-free survival. Crucially, this work establishes an optimal control problem for time-to-progression and mathematically proves that under biological constraints like neutral competition or low initial burden, the theoretically optimal strategy is unrealizable as it requires infinitely many treatment holidays, rendering it clinically impractical. These findings emphasize personalized treatment strategies for enhancing long-term therapeutic outcomes. Mathematics Subject Classification92C50,92C42.

systems biology↗