Search bioRxivSearch

Biology subjects

Zhai, X.

Publications and source records attributed to Zhai, X..

3 recordsLinked to original sources

A Neural Ensemble Correlation Code for Sound Category Identification

Humans and other animals effortlessly identify sounds and categorize them into behaviorally relevant categories. Yet, the acoustic features and neural transformations that enable the formation of perceptual categories are largely unknown. Here we demonstrate that correlation statistics between frequency-organized cochlear sound channels are reflected in the neural ensemble activity of the auditory midbrain and that such activity, in turn, can contribute to discrimination of perceptual categories. Using multi-channel neural recordings in the auditory midbrain of unanesthetized rabbits, we first demonstrate that neuron ensemble correlations are highly structured in both time and frequency and can be decoded to distinguish sounds. Next, we develop a probabilistic framework for measuring the nonstationary spectro-temporal correlation statistics between frequency organized channels in an auditory model. In a 13-category sound identification task, classification accuracy is consistently high (>80%), improving with sound duration and plateauing at ~ 1-3 seconds, mirroring human performance trends. Nonstationary short-term correlation statistics are more informative about the sound category than the time-average correlation statistics (84% vs. 73% accuracy). When tested independently, the spectral and temporal correlations between the model outputs achieved a similar level of performance and appear to contribute equally. These results outline a plausible neural code in which correlation statistics between neuron ensembles of different frequencies can be read-out to identify and distinguish acoustic categories.

neuroscience

A stable beneficial symbiotic relationship between endophytic fungus Schizophyllum commune and host plant Panax ginseng

Endophytes and plants can establish specific long-term symbiosis through the accumulation of secondary metabolites. Interactions between microbial inhabitants represent a novel area of study for natural products research. In this study, a strain of endophyte 3R-2 that can enhance the biomass and contents of ginsenoside Rc, ginsenoside Rg2 and ginsenoside Rg3 of Panax ginseng hairy roots was screened out via HPLC, which was identified as Schizophyllum commune through the morphological and molecular identification. On the base, we found the infection of the endophyte were obviously observed widely in the P. ginseng and the strain formed a stable relationship with P. ginseng hairy roots in parenchyma cells around through tissues embedding slicing, HE ammonium silver staining and immunofluorescence staining. On the other hand, elicitors of fungus 3R-2 can also significantly promote hairy root growth and contents of several ginsenosides, even several times higher than 3R-2 mycelium did. Moreover, S. commune 3R-2 mycelium and its elicitor could enhance the transcriptional activity of key genes during the ginsenosides biosynthetic pathway dramatically. Thus, endophyte S. commune 3R-2 and its elicitor change the chemical substance content by regulating the expression of genes involved in the secondary metabolite biosynthetic pathway.

plant biology

Endophyte Chaetomium globosum D38 and its elicitors promote tanshinones accumulation of Salvia miltiorrhiza

Due to the low yield of tanshinones and their analogues in Salvia miltiorrhiza, there are all kinds of stimulation strategies having been applied to improve tanshinones output in plant tissue cultures. Endophytic fungi have formed various different relationships with their host plants withstanding host and environmental factors, including symbiotic, mutualistic, commensalistic, and parasitic. Thus we take the assumption that endophytic fungi may be an emerging microbial tool used to promote secondary metabolism, which will promote the production of active compounds through endophyte-based biology method. Our study therefore aimed to examine the effects of live endophytic fungus Chaetomium globosum D38 and its elicitors on the accumulation of tanshinones in hairy root cultures of Salvia miltiorrhiza. C. globosum D38 mainly colonized in the intercellular gap of xylem parenchyma cells of S. miltiorrhiza hairy root, during long term co-existence without any toxicity against S. miltiorrhiza hairy root. Moreover, both of the live fungus and its mycelia extracts could induce the production of tanshinones, in special dihydrotanshinone I and cryptotanshinone. The effects of mycelia extracts were much stronger than that of the live fungus on tanshinones synthesis, which increased the transcriptional activity of genes with repect to tanshinone biosynthetic pathway obviously. Our results indicated that both of the live C. globosum D38 and its mycelia extracts could be utilized for tanshinones accumulation in S. miltiorrhiza hairy root. Whats more, D38 also could be made into biotic fertilizer applying into S.miltiorrhiza seddlings, which not only promoted host growth but the tanshinones and phenylpropionic acid accumulation. In the soil environment, D38 had formed bitrophic and mutual beneficial relationship with the host and enhanced the primary metabolism on the whole so as to have facilitative effects on phenylpropionic acid accumulation. To sum up, Chaetomium globosum D38 was a highly effective endophytic fungus for S. miltiorrhiza.

developmental biology