Biology subjects

Zerfass, C.

Publications and source records attributed to Zerfass, C..

2 recordsLinked to original sources

bioRxiv2018

Manganese oxide biomineralization is a social trait protecting against nitrite toxicity

Manganese bio-mineralization by oxidation is a costly but, still, widespread process among bacteria and fungi. While certain potential advantages of manganese oxidation have been suggested, to date there is no conclusive experimental evidence for, how and if this process impacts microbial fitness in the environment. Here we show how a model organism for manganese oxidation, Roseobacter sp. AzwK-3b, is growth-inhibited by nitrite, and that this inhibition is mitigated when manganese is added to the culture medium. We show that manganese-mediated mitigation of nitrite-inhibition is dependent on the culture inoculum size, with larger inocula being able to withstand higher concentrations of nitrite stress. Furthermore, the bio-mineralized manganese oxide (MnOX) forms granular precipitates in the culture, rather than sheaths around individual cells. These findings support the notion that MnOX is a shared community product that improves the cultures survival against nitrite-stress. We show that the mechanistic basis of the MnOX effect involves both its ability to catalyze nitrite oxidation into (non-toxic) nitrate under physiological conditions, and its potential role in influencing redox chemistry around reactive oxygen species (ROS). Taken together, these results provide for the first direct evidence of improved microbial fitness by MnOX deposition in an ecological setting, i.e. mitigation of nitrite toxicity, and point to a key role of MnOX in handling stresses arising from ROS. These findings could be of general relevance for all organisms oxidizing manganese, allowing them to offset costs associated with extracellular bio-mineralization.

microbiology↗

bioRxiv2017

Impact of spatial organization on a novel auxotrophic interaction among soil microbes

A key prerequisite to achieve a deeper understanding of microbial communities and to engineer synthetic ones is to identify the individual metabolic interactions among key species and how these interactions are affected by different environmental factors. Deciphering the physiological basis of species-species and species-environment interactions in spatially organized environment requires reductionist approaches using ecologically and functionally relevant species. To this end, we focus here on a specific defined system to study the metabolic interactions in a spatial context among a plant-beneficial endophytic fungus Serendipita indica, and the soil-dwelling model bacterium Bacillus subtilis. Focusing on the growth dynamics of S. indica under defined conditions, we identified an auxotrophy in this organism for thiamine, which is a key co-factor for essential reactions in the central carbon metabolism. We found that S. indica growth is restored in thiamine-free media, when co-cultured with B. subtilis. The success of this auxotrophic interaction, however, was dependent on the spatial and temporal organization of the system; the beneficial impact of B. subtilis was only visible when its inoculation was separated from that of S. indica either in time or space. These findings describe a key auxotrophic interaction in the soil among organisms that are shown to be important for plant ecosystem functioning, and point to the potential importance of spatial and temporal organization for the success of auxotrophic interactions. These points can be particularly important for engineering of minimal functional synthetic communities as plant-seed treatments and for vertical farming under defined conditions.

systems biology↗