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Yuasa, K.

Publications and source records attributed to Yuasa, K..

3 recordsLinked to original sources

Pretraining Objective Shapes Cross-Category Generalization in Affective Image Prediction: A Geometric Comparison of Vision Transformer Encoders

The geometry of representations learned by deep neural networks is shaped jointly by architecture and pretraining objective, yet disentangling these two factors remains difficult. Here we isolate the contribution of pretraining objective by comparing two Vision Transformers from the same backbone family but trained under different objectives: language-image contrastive learning (CLIP) and ImageNet-21k classification. Using continuous Valence-Arousal prediction on the OASIS dataset as a probe of representational quality, we evaluated frozen features under Leave-One-Theme-Out and Leave-One-Category-Out cross-validation, the latter requiring extrapolation to entirely unseen semantic categories. The contrastively pretrained encoder generalized substantially better than the classification-pretrained encoder under both protocols, with the gap widening sharply when held-out categories required cross-category generalization. To characterize why the two representations differ, we developed a geometric analysis of prediction errors, treating per-image errors as vectors in the affective plane and quantifying their spatial structure via weighted phase-locking, trajectory-based occupancy entropy, and effective dimensionality. The classification-pretrained representation collapsed errors into a small number of attractor regions with a strong center-ward pull, whereas the language-aligned representation distributed errors broadly across the affective space. Layer-wise linear probing further revealed that affective information was distributed across depth in the contrastive encoder but increasingly concentrated in deeper layers of the classification encoder, mirroring the texture-bias and category-anchored statistics characteristic of ImageNet-trained representations. These results provide a representation-geometric account of how the choice of pretraining objective, holding architecture constant, determines whether learned features generalize across semantic boundaries or remain confined to category-bound visual regularities. HighlightsO_LIIsolate the effect of pretraining objective by holding the Vision Transformer backbone constant. C_LIO_LIContrastively pretrained features generalize across unseen semantic categories where classification-pretrained features fail. C_LIO_LIIntroduce a geometric analysis of prediction errors based on phase-locking and occupancy entropy. C_LIO_LIClassification pretraining produces concentrated error attractors and a rigid centerward bias. C_LIO_LIAffective information is distributed across depth in CLIP but localized in late layers of the classification ViT. C_LI

neuroscience↗

Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect akuBGL activity

The defensive-offensive associations between algae and herbivores determine marine ecology. Brown algae utilize phlorotannin as their chemical defense against the predator Aplysia kurodai, which uses {beta}-glucosidase (akuBGL) to digest the laminarin in algae to glucose. Moreover, A. kurodai employs Eisenia hydrolysis-enhancing protein (EHEP) as an offense to protect akuBGL activity from phlorotannin inhibition by precipitating phlorotannin. To underpin the molecular mechanism of this digestive-defensive-offensive system, we determined the structures of apo and tannic-acid (TNA, a phlorotannin-analog) bound form of EHEP, as well as apo akuBGL. EHEP consisted of three peritrophin-A domains formed in a triangle and bound TNA in the center without significant conformational changes. Structural comparison between EHEP and EHEP-TNA led us to find that EHEP can be resolubilized from phlorotannin-precipitation at an alkaline pH, which reflects a requirement in the digestive tract. akuBGL contained two GH1 domains, only one of which conserved the active site. Combining docking analysis, we propose the mechanisms by which phlorotannin inhibits akuBGL by occupying the substrate-binding pocket, and EHEP protects akuBGL against the inhibition by binding with phlorotannin to free the akuBGL pocket.

biochemistry↗

Spatial Tuning of Alpha Oscillations in Human Visual Cortex

AO_SCPLOWBSTRACTC_SCPLOWNeuronal oscillations at about 10 Hz, called alpha oscillations, are often thought to arise from synchronous activity across occipital cortex, reflecting general cognitive states such as arousal and alertness. However, there is also evidence that modulation of alpha oscillations in visual cortex can be spatially specific. Here, we used intracranial electrodes in human patients to measure alpha oscillations in response to visual stimuli whose location varied systematically across the visual field. We separated the alpha oscillatory power from broadband power changes. The variation in alpha oscillatory power with stimulus position was then fit by a population receptive field (pRF) model. We find that the alpha pRFs have similar center locations to pRFs estimated from broadband power (70-180 Hz) but are several times larger. The results demonstrate that alpha suppression in human visual cortex can be precisely tuned. Finally, we show how the pattern of alpha responses can explain several features of exogenous visual attention. Significance StatementThe alpha oscillation is the largest electrical signal generated by the human brain. An important question in systems neuroscience is the degree to which this oscillation reflects system-wide states and behaviors such as arousal, alertness, and attention, versus much more specific functions in the routing and processing of information. We examined alpha oscillations at high spatial precision in human patients with intracranial electrodes implanted over visual cortex. We discovered a surprisingly high spatial specificity of visually driven alpha oscillations, which we quantified with receptive field models. We further use our discoveries about properties of the alpha response to show a link between these oscillations and the spread of visual attention. Grant support: NIH R01 MH111417 (Petridou, Winawer, Ramsey, Devinsky); JSPS Overseas Research Fellowship (Yuasa) The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health

neuroscience↗