Biology subjects

Yu, J.-P. J.

Publications and source records attributed to Yu, J.-P. J..

5 recordsLinked to original sources

bioRxiv2026

Sex-Specific Regional Brain Morphometric Correlates of Neighborhood Socioeconomic Disadvantage in Clinical Neuroimaging

BACKGROUND AND PURPOSENeighborhood-level socioeconomic disadvantage is associated with adverse brain morphometry, yet whether these associations differ by biological sex remain opaque. Here, we investigated sex-specific associations between the area deprivation index and brain morphometry derived from routine clinical MRI in a real-world clinical population. MATERIALS AND METHODSIntracranial volume-normalized regional brain volumes were extracted from T1-weighted MRI examinations performed in 2,863 consecutive clinical patients (median age 54 years [IQR 38-68]; 61.2% female) at a single academic medical center and associated community partners using an automated atlas-based segmentation pipeline. Exploratory factor analysis was applied to 131 regional brain volumes to identify latent neuroanatomical morphometric networks. Sex-stratified linear regression models examined associations between area deprivation index national percentile rank and each factor score, adjusting for age, with correction for multiple comparisons. RESULTSFactor analysis identified five neuroanatomical morphometric networks: cerebellar (ML1), frontal/executive (ML2), subcortical-ventricular (ML3), medial temporal/limbic (ML4), and posterior cortical/visual (ML5). In male patients (n = 1,112), linear regressions revealed that greater neighborhood-level socioeconomic disadvantage was significantly associated with lower factor scores on the cerebellar ({beta} = -0.006, 95% CI [-0.009, -0.003], P < .001), medial temporal/limbic ({beta} = -0.004, 95% CI [-0.007, -0.001], P = .01), and frontal/executive ({beta} = -0.004, 95% CI [-0.007, -0.0004], P = .04) networks. No significant associations were observed in female patients (all Ps [≥] .61). CONCLUSIONSIn a real-world clinical population, neighborhood-level socioeconomic disadvantage was associated with lower regional brain volumes across cerebellar, frontal/executive, and medial temporal/limbic neuroanatomical morphometric networks in male but not female patients. These findings suggest that the neuroanatomical correlates of neighborhood disadvantage may be sex-specific, and that sex-stratified analyses may be necessary to fully characterize the relationship between the social exposome and brain morphometry in clinical neuroimaging research.

neuroscience↗

bioRxiv2026

Neighborhood-Level Disadvantage Impacts Multiple Measures of Brain Health: An Imaging Epidemiology Study

BackgroundThe relationship between neighborhood-level socioeconomic disadvantage and brain health is an emerging area of research with critical implications for public health and clinical practice, yet its influence on brain structure remains unclear. PurposeTo investigate the epidemiological association between neighborhood-level socioeconomic disadvantage [Area Deprivation Index (ADI)] and morphometric neuroimaging variables in a consecutive, non-disease enriched patient population. Materials and MethodsThis study, conducted at an academic medical center and associated community partners, used consecutive cross-sectional MRI neuroimaging data from 2,826 inpatient and outpatient individuals without radiological evidence of disease from January 2024 to June 2024. ADI, a geospatially determined index of neighborhood-level disadvantage, was calculated for each individual. Linear regressions tested the relationship between ADI and multiple morphometric variables: brain age gap (BAG; estimated - chronological BA), total brain tissue volume (TBV; total gray + white matter), five subcortical region volumes (hippocampus, thalamus, caudate, putamen, and nucleus accumbens) and four cortical region volumes [anterior cingulate cortex, posterior cingulate cortex, medial prefrontal cortex (MPFC), lateral PFC (LPFC)]. Volumetric measures were normalized to intracranial volume. Models controlled for age, sex, and total white matter hyperintensity volume (WMHV). Results2,826 individuals (mean age, 52.7 {+/-} 18.8 [standard deviation]; 1732 women) were evaluated. Residence in the 20% most disadvantaged neighborhoods was associated with a higher BAG ({beta}s > 2.12, Ps < .01) and decreased TBV ({beta}s < -5.12, Ps < .05). Additionally, increased WMHV was higher among those in the most disadvantaged neighborhoods (ts < - 2.50, Ps < .05) and associated with lower volume in most regions. Interaction models showed increased negative associations between WMHV and volumes of the caudate, nucleus accumbens, and lateral prefrontal cortex among those in the most disadvantaged neighborhoods. ConclusionsNeighborhood disadvantage is associated with adverse brain morphometry, including higher BAG, lower TBV, and amplified vascular-related regional volume loss. Key ResultsO_LIIn 2,826 adults (mean age, 53 years {+/-} 19; 1,732 women), residence in the most disadvantaged neighborhoods (national: 116/2,826, 4%; state: 129/2826, 5%) was associated with higher brain age gap at the national ({beta} = 2.12, 95% CI = 0.81 to 3.43, P = .001) and state levels ({beta} = 2.36; 95% CI = 1.10 to 3.61, P < .001). C_LIO_LITotal brain tissue volume was lower at the national ({beta} = -5.12, 95% CI = -10.13 to -0.11, P = .045) and state levels ({beta} = -6.13, 95% CI = -10.90 to -1.37, P = .011). C_LIO_LIWhite matter hyperintensity volume was higher in the most disadvantaged group (national: P = .013; state: P = .003) and demonstrated amplified associations with caudate, nucleus accumbens, and lateral prefrontal cortex volumes in the most disadvantaged group at the national and/or state levels (Ps < .05). C_LI

neuroscience↗

bioRxiv2025

Cellular deconvolution of the brain with topological magnetic resonance image analysis

Magnetic resonance imaging (MRI) is foundational tool in neuroscience, enabling characterization of neuroanatomical markers of disease, behavior, and cognition. However, the precise cellular processes driving the structural and functional readouts provided by MRI remain opaque. Non-invasively assessing cell type, abundance, and location using MRI has the potential to revolutionize both basic science and clinical practice. To this end, we developed SpaTial Representation and Analysis using Topological Architecture (STRATA), an image-based gradient-boosted machine learning framework, which quantifies cell type proportions of neurons, astrocytes, oligodendrocytes, and microglia from MR images. Here we demonstrate and validate STRATA on diverse disease models, species, and regions of interest that together highlight the generalizability of the STRATA framework.

neuroscience↗

bioRxiv2024

Early life intestinal inflammation alters gut microbiome, impairing gut-brain communication and reproductive behavior in mice

Despite recent advances in understanding the connection between the gut microbiota and the adult brain, there remains a wide knowledge gap in how gut inflammation impacts brain development. We hypothesized that intestinal inflammation in early life would negatively affect neurodevelopment through dysregulation of microbiota communication to the brain. We therefore developed a novel pediatric chemical model of inflammatory bowel disease (IBD), an incurable condition affecting millions of people worldwide. IBD is characterized by chronic intestinal inflammation, and has comorbid symptoms of anxiety, depression and cognitive impairment. Significantly, 25% of patients with IBD are diagnosed during childhood, and the effect of chronic inflammation during this critical period of development is largely unknown. This study investigated the effects of early-life gut inflammation induced by DSS (dextran sulfate sodium) on a range of microbiota, endocrine, and behavioral outcomes, focusing on sex-specific impacts. DSS-treated mice exhibited increased intestinal inflammation, altered microbiota membership, and changes in microbiota-mediated circulating metabolites. The majority of behavioral measures were unaffected, with the exception of impaired mate-seeking behaviors in DSS-treated males. DSS-treated males also showed significantly smaller seminal vesicles, lower circulating androgens, and decreased intestinal hormone-activating enzyme activity. In the brain, microglia morphology was chronically altered with DSS treatment in a sex-specific manner. The results suggest that early-life gut inflammation causes changes in gut microbiota composition, affecting short-chain fatty acid (SCFA) producers and glucuronidase (GUS) activity, correlating with altered SCFA and androgen levels. The findings emphasize the developmental sensitivity to inflammation-induced changes in endocrine signalling and underscore long-lasting physiological and microbiome changes associated with juvenile IBD. HighlightsEarly-life gut inflammation produces sex-specific effects on i) microbiome, ii) sex hormones and iii) behaviour. Both sexes show disrupted gut bacterial members that regulate sex hormone levels. Male mice demonstrate deficits in mate seeking, which may be mediated by reduced androgen levels. Both male and female mice demonstrate shifts in hippocampal microglial morphology.

neuroscience↗

bioRxiv2022

Trimethylamine N-oxide reduces neurite density and plaque intensity in a murine model of Alzheimer disease

BackgroundAlzheimers disease (AD) is the most common aging-associated neurodegenerative disease; nevertheless, the etiology and progression of the disease is still incompletely understood. We have previously shown that the microbially-derived metabolite trimethylamine N-oxide (TMAO) is elevated in the cerebrospinal fluid (CSF) of individuals with cognitive impairment due to AD and positively correlates with increases in CSF biomarkers for tangle, plaque, and neuronal pathology. ObjectiveWe assessed the direct impact of TMAO on AD progression. MethodsTo do so, transgenic 5XFAD mice were supplemented with TMAO for 12 weeks. ResultsOral TMAO administration resulted in significantly reduced neurite density in several regions of the brain, as assessed through quantitative brain microstructure imaging with neurite orientation dispersion and density imaging (NODDI) magnetic resonance imaging (MRI). Amyloid-{beta} plaque mean intensity was reduced, while plaque count and size remained unaltered. Proteomics analysis of the cortex revealed that TMAO treatment impacted the expression of 31 proteins (1.5-fold cut-off) in 5XFAD mice, including proteins known to influence neuronal health and amyloid-{beta} precursor protein processing. TMAO treatment did not alter astrocyte and microglial response (as determined by histological analysis) nor cortical synaptic protein expression. ConclusionThese data suggest that elevated plasma TMAO impacts AD pathology via reductions in neurite density.

neuroscience↗