Biology subjects

Yin, S.

Publications and source records attributed to Yin, S..

2 recordsLinked to original sources

bioRxiv2018

Strong diffusional coupling between spines and dendrites promotes long-term potentiation of Schaffer collateral synapses

Dendritic spines on CA1 pyramidal cells are highly variable in size and shape. For some spine synapses, long and narrow spine necks provide strong diffusional and electrical isolation from the main dendrite, and it has been speculated that synapses on well isolated spines could be more plastic than synapses on spines with low resistance necks. Here we test this hypothesis by first measuring the diffusional resistance of spine necks, then pairing two-photon glutamate uncaging with bursts of back-propagating action potentials. Paired stimulation induced significant (155%) long-term potentiation (LTP) of synapses on weakly isolated spines, but no net functional change of synapses on highly isolated spines. No correlation was found between spine head volume and functional plasticity of the synapses. We conclude that contrary to our expectations, diffusional isolation makes potentiation of synapses more difficult. Our results support the concept that delivery of plasticity-related proteins from the dendrite into the spine is a limiting factor for LTP.

neuroscience↗

bioRxiv2017

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages

5-Hydroxymethylcytosine (5hmC) is an important mammalian DNA epigenetic modification that has been linked to gene regulation and cancer pathogenesis. Here we explored the diagnostic potential of 5hmC in circulating cell-free DNA (cfDNA) using a sensitive chemical labeling-based low-input shotgun sequencing approach. We sequenced cell-free 5hmC from 49 patients of seven different cancer types and found distinct features that could be used to predict cancer types and stages with high accuracy. Specifically, we discovered that lung cancer leads to a progressive global loss of 5hmC in cfDNA, whereas hepatocellular carcinoma and pancreatic cancer lead to disease-specific changes in the cell-free hydroxymethylome. Our proof of principle results suggest that cell-free 5hmC signatures may potentially be used not only to identify cancer types but also to track tumor stage in some cancers.\n\nOne Sentence SummaryAnalyzing the epigenetic modification 5-hydroxymethylcysoine in circulating cell-free DNA reveals tumor tissue of origin and stages for cancer diagnostics.

genomics↗