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Yavarinasab, A.

Publications and source records attributed to Yavarinasab, A..

2 recordsLinked to original sources

Electrogenic Dynamics of Biofilm Formation: Correlation Between Genetic Expression and Electrochemical Activity in Bacillus subtilis

Bacterial biofilms are structured microbial communities that play a big role in diverse processes such as nutrient cycling and bacterial pathogenesis. Biofilms are known for their electron transfer properties which are essential for metabolic processes, microbial survival, and maintaining redox balance. In this study, we investigated the electrogenic properties of Bacillus subtilis, a bacterial producer of electron-donating biofilms. Interdigitated gold electrodes were utilized to continuously measure the electrochemical activity of biofilm-forming B. subtilis cells as well as genetic mutants unable to create them (biofilm-deficient), over three days of growth. The formation of extracellular polymeric substances (EPS) and filamentous appendages was monitored via scanning electron microscopy (SEM). Chronoamperometry was used to assess electrochemical activity, which showed fluctuations in electrical current at specific time points in biofilm-forming cells. In contrast, biofilm-deficient cells showed no corresponding changes in current. Cyclic voltammetry (CV) revealed significant differences between the voltammograms of biofilm-forming and biofilm-deficient cells that were hypothesized to be a result of the reduction of secreted flavodoxin only in biofilm-forming cells. Electrochemical impedance spectroscopy (EIS) was also performed at various intervals and analyzed using an equivalent circuit model. We identified the presence of a charge transfer resistance (Rct) exclusively in biofilm-forming cells which correlated to the time of increased electrochemical activity measured using choronoamperometry. Finally, through confocal microscopy, we found that the expression of a gene involved in biofilm matrix formation, tasA, was correlated with the time where electrochemical charge transfer was measured. Altogether, these results indicate that electrochemical activity is primarily present in biofilm-forming cells rather than in biofilm-deficient mutants. By combining electrochemical and microscopic methods, a methodology was developed to continuously monitor the stages of biofilm formation through measurement of electrochemical activity, substantiating a correlation between the expression of biofilm genes and their electrochemical or redox activities. These data show that electrochemical activities within biofilms vary over time and there is a temporal relationship between these processes and the expression of genes responsible for biofilm development.

bioengineering↗

An impedance-based chemiresistor for the real-time detection of gut microbiota-generated short-chain fatty acids

Short-chain fatty acids (SCFAs) are key molecules produced by gut bacteria in the intestine, that are absorbed into the bloodstream and strongly influence human health. SCFA disruption and imbalances have been linked to many diseases; however, they are seldom used diagnostically as their detection requires extensive sample preparation and expensive equipment. In this work, an electrochemical sensor was developed to enable real-time, quantitative measurement of SCFAs from complex samples in liquid phase without the need for extraction, evaporation, or destruction. An impedance-based sensor for in vitro detection of acetic acid, propionic acid, and butyric acid (accounting for more than 95% of SCFAs in the intestine) was fabricated by the deposition of a ZnO and polyvinyl alcohol (PVA) on the surface of a microfabricated interdigitated gold electrode. The sensor was first exposed to a broad, physiologically relevant range of concentrations of SCFAs in isolation (0.5-20 mg/ml) and unlike previously published SCFA sensors that could detect only in gas form with the aid of evaporation, it was able to detect them directly in the liquid phase at room temperature. Electrochemical impedance spectroscopy analysis was then applied to the mixture of SCFAs prepared at different ratios and in complex media at concentrations ranging from 0.5 to 10 mg/ml, which showed the capability of the sensor to measure SCFAs in experimentally relevant mixture. The recorded faradaic responses were then used to train a fit-to-data model to utilize the sensor to screen human bacterial isolates and detect which species secrete SCFAs in vitro. This work will allow for the rapid and non-destructive determination of the levels of SCFAs in complex biological samples, providing a miniaturized, highly stable, and highly sensitive sensor for real-time monitoring applications.

bioengineering↗