Search bioRxivSearch

Biology subjects

Yang, X.-L.

Publications and source records attributed to Yang, X.-L..

2 recordsLinked to original sources

Network analysis of lymphocyte nucleus staining image

Background: A complex network has been studied and applied in various disciplines. As network analysis and image processing are based on matrices, this research analysed the changes in the chromatin image of lymphocyte nuclei in peripheral blood of humans using a network motif and static features (static parameters), so as to complete image classification with network method.\n\nMethods: Image processing technology was used to establish a chromatin image network of a cell nucleus; Network analysis tool Pajek was used to display the special motif of an isolated structural hole with different symmetric line values; afterwards, the frequency of occurrence of this structural hole in patients with nasopharyngeal carcinoma and AIDS, and healthy people was computed. Then by applying the network static features as variables, the chromatin images of stained lymphocytes from the three groups of people were classified and recognised by using an extreme learning machine (ELM).\n\nResults: The frequency of occurrence of the isolated structural hole with different symmetric line values was adopted to distinguish the structures of the chromatins of peripheral blood lymphocytes in patients with nasopharyngeal carcinoma and AIDS, and healthy people. Similarly, The static features of the chromatin image network of a cell nucleus were applied to classify and recognise the morphological and structural changes in chromatins for peripheral blood lymphocytes in the three groups of people.\n\nConclusion: The surface chemical and physical characteristics, as well as the polymerisation link status of biomacromolecules such as DNA, RNA, and protein in the lymphocyte nucleus change under certain pathological conditions. The change influences the combination of small molecular staining materials and any associated biomacromolecules. Therefore, various macroscopic and microscopic changes were found in the chromatin images of the cell nucleus. The microscopic changes include the variations of the extent of staining of chromatin in the nuclei, coarseness and direction of the texture therein, the size of stained conglomerations, etc. These changes contribute to the differences in chromatin image networks among the same type of cells across the three groups. Based on this, the model can be used to classify and reorganise certain diseases. The results prove that using complex network to analyse the chromatin structure of a cell nucleus is of significance.

bioinformatics

Investigating on relationship between effective quantum efficiency and irradiance

AbstractModels describing the relationship between effective quantum efficiency of PS II ({Phi}PSII) and irradiance (I) are routinely used to determine how irradiance influences effective quantum efficiency and photosynthetic electron transport rate (ETR). However, with no single model one can accurately describe the relationship between{Phi} PSII and I, and explain the interdependence between{Phi} PSII and biophysical properties of photosynthetic pigments, especially in plants growing under low level irradiances. Basing on the mechanistic model of photosynthetic electron transport rate we have developed the model of the relationship between{Phi} PSII and I. The new model reveals that{Phi} PSII increases with photochemistry (kP) and heat dissipation (kD). Furthermore, the values of key parameters calculated using the new model were compared with the values calculated with two other empirical models. The new model was perfectly fitted to the light-response curves of{Phi} PSII. The key calculated photosynthetic parameters: maximum{Phi} PSII, maximum ETR and their corresponding saturation irradiance were close to the measured values. In addition, our model associates{Phi} PSII with intrinsic features of photosynthetic pigments. We concluded that{Phi} PSII decreased with increasing I due to the decrease in the effective absorption cross-section of photosynthetic pigments molecules.\n\nHighlightA model of the relationship between effective quantum efficiency of PS II ({Phi}PSII) and irradiance (I) has been developed. Using this new model it was found that{Phi} PSII decreased with increasing I due to the decrease in the effective absorption cross-section of photosynthetic pigments molecules.\n\nAbbreviations

plant biology