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Biology subjects

Yaghoobi, M.

Publications and source records attributed to Yaghoobi, M..

3 recordsLinked to original sources

Microfluidic cultivation enables probiotic growth under thermal stress

Thermal stress tolerance is essential for preserving the viability and functionality of probiotic bacteria. Conventional batch cultures offer limited control over temperature changes across space and time. We have introduced an integrated microfluidic platform to continuously cultivate bacteria within a precisely defined and tunable thermal environment, and used Lacticaseibacillus rhamnosus as a model system. The device features serially connected microchambers with independently controlled heating zones, creating distinct and dynamic thermal profiles as the bacteria travel from one microchamber to the next. Biomass accumulation was observed at 37 {degrees}C within 48 h in all microchambers, no growth occurred at 49 {degrees}C even after 72 h. When the cells were exposed to a periodic thermal landscape, where an increase in temperature in one chamber was followed by a return to 37 {degrees}C in the next, growth was observed in the last chamber (49 {degrees}C) after three days indicating adaptation to thermal stress. Cells that grew on-chip at 49 {degrees}C showed no growth in off-chip experiments. Continuous monitoring of pH at the chip outlet confirmed ongoing metabolic activity in growing populations. Tailored microfluidic thermal environments were shown to help bacteria grow even under otherwise inhibitory conditions.

bioengineering↗

Ladder shaped microfluidic system enabling rapid antibiotic susceptibility testing with standardized concentration panel

Antibiotics are often prescribed before pathogens are identified and susceptibility to the prescribed drug is confirmed; laboratory results may take up to 3 days. Using rapid antibiotic susceptibility testing (AST) this timeline can be compressed. We designed a microfluidic ladder-based system that generates a twofold serial dilution of antibiotics comparable to current national and international standards. This consolidated design, with minimal handling steps, has cut down the time-to-result for AST from 16-20 h to 4-5 h. Our system has a 91.75 % rate of agreement with the commercial AST system for Gram-negative and Gram-positive bacterial isolates from canine urinary tract infections (UTI) tested against seven clinically relevant antibiotics. Overall, the system showed a matching rate of 92.71 % - 94.54 % with Gram-negative pathogens, and 85.00 % - 88.57 % with Gram-positive pathogens with no statistical difference between the pathogens or antibiotics. We also tested bacteria filtered directly from urine samples, potentially reducing the total sample-to-result time from 2-3 days to 4 hours.

microbiology↗

Progressive Sperm Separation Using Parallelized, High-Throughput, Microchamber-based Microfluidics

Motility is one of the most important factors in sperm migration toward egg. Therefore, sperm separation based on motility increases the chance of the best sperm selection in the process of infertility treatments. Unfortunately, it is now vastly done by conventional procedures which lack certain delicacy and precision and increase the risk of damage to sperm cells. Microfluidic systems, on the other hand, can sort sperm in a less intrusive way. However, microfluidic techniques have yet to receive widespread adoption in clinical settings, not only due to their relatively cumbersome operation, but also their extremely low outcome, leaving them inefficient in practice. Here we propose a microchamber-based microfluidic platform that can separate progressive motile sperm from nonviable sperm and debris as well as trapped nonprogressive sperm in the microchambers. Our platform is operated in a short period of time (<10 min) with an excellent degree of controllability, without any prior sample preparation. Our results show that the microchambers depth does not affect the residence time of motile sperm. Therefore, we are able to inspect high sample volumes (1 mL) within the same time. Furthermore, we maximize the concentration of the collected sperm by tuning the washing medium flow rate above the sperm rheotactic threshold. We foresee that our microfluidic platform may provide a facile solution for high-throughput, robust, and easy-to-modify for collection of progressive sperm needed for assisted reproductive technologies (ARTs). Significance StatementAssisted Reproductive Technologies require efficient, minimally invasive, and fast methods of sperm separation. Centrifugation methods used in clinics and biological research labs, fall short in these aspects as they are low-yield, intrusive to sperms DNA, and time consuming. We have developed a microchamber-based microfluidic platform for high-throughput separation of progressive motile sperm from undiluted raw semen samples. The method was further optimized to increase the concentration of collected samples. Higher concentration of collected samples combined with higher motility of the separated sperm compared to those in raw semen, make it a suitable choice in clinical applications, fertility diagnostics, and fundamental research.

bioengineering↗