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Biology subjects

Yabe, T.

Publications and source records attributed to Yabe, T..

3 recordsLinked to original sources

Differential spreading behaviors of Nodal signalling molecules in the extracellular space cooperatively shape left-right asymmetry

Left-right (LR) patterning of vertebrate embryos is mediated by diffusive proteins secreted mainly from the left-right organizer (LRO), such as TGF-{beta} superfamily ligands Nodal and Gdf1, as well as their inhibitors Dand5 and Lefty. However, precise modes of action for these proteins remain unclear due to difficulties in visualizing and manipulating their extracellular behaviors. Here we visualize and manipulate the extracellular dynamics of these proteins employing novel transgenic zebrafish lines and extracellular trapping molecules including the morphotrap. We demonstrate that the heterodimer of Nodal and Gdf1, which is the major signal transducer in vertebrate Nodal signalling, spreads from the LRO through the extracellular space in the paraxial mesoderm (PM) to its target tissue, the lateral plate mesoderm (LPM), in a free-diffusion-like manner. By contrast, Dand5 is highly enriched in the right PM, where it is immobilized through interaction with heparan sulfate proteoglycans and asymmetrically suppresses Nodal signalling. Our study uncovers diverse modes of action for LR-related secreted proteins in the extracellular space, providing a new framework for understanding how spatially organized Nodal signalling molecules shape embryonic LR asymmetry.

developmental biology↗

Trichinella spiralis secretes stage-specific extracellular vesicles for modulating host microenvironment for parasitism.

Extracellular vesicles (EVs) regulate cell-to-cell communication by transferring biomolecules within individuals or between different organisms. Trichinella spiralis is thought to secrete EVs to establish parasitism, but the detailed mechanisms of EV-mediated parasitic strategies have remained unclear. We identified EVs of T. spiralis as stage-specific in adult worms in host intestine (AW-EVs) and larvae in host muscles (ML-EVs). Stage-specific EVs exhibited unique functions, such as suppressing the expression of mucin-related genes only in AW-EVs and inducing genes associated with myoblast differentiation found in nurse cell formation in ML-EVs. Both EVs also suppressed IL-6 expression. These functions corelated with the contents of each EV, as confirmed by proteomics and whole microRNA sequencing. One of the microRNAs common to both EVs, tsp-miR-1, was involved in the suppression of IL-6 expression. These results suggest that Trichinella spiralis secretes stage-specific EVs containing unique as well as common biomolecules to regulate the host microenvironment for parasitism.

microbiology↗

Autophagy controls lipid droplet formation by fine-tuning NCoR1 levels

Lipid droplets (LDs) are dynamic organelles that store neutral lipids during times of energy excess, such as following a meal. LDs serve as an energy reservoir during fasting and have a buffering capacity that prevents lipotoxicity. Autophagy and the autophagic machinery have been proposed to play a role in LD biogenesis but the underlying molecular mechanism remains unclear. Here, we show that when nuclear receptor co-repressor 1 (NCoR1), which inhibits the transactivation of nuclear receptors, accumulates due to autophagy suppression, LD biogenesis is blocked. Ablation of ATG7, a gene essential for autophagy, suppressed the expression of gene targets of liver X receptor (LXR), a nuclear receptor responsible for fatty acid and triglyceride synthesis in an NCoR1-dependent manner. LD biogenesis in response to fasting and after hepatectomy was hampered by the suppression of autophagy. These results indicate that autophagy controls physiological hepatosteatosis by fine-tuning NCoR1 protein levels.

cell biology↗