Search bioRxiv⌕ Search

Biology subjects

Wurz, E.

Publications and source records attributed to Wurz, E..

3 recordsLinked to original sources

The deep-sea ecosystem engineer Geodia barretti (Porifera, Demospongiae) maintains basic physiological functions under simulated future ocean pH and temperature conditions

Global ocean warming and acidification will alter the physicochemical conditions in the deep North-Atlantic Ocean. Here, extensive sponge grounds, often dominated by the demosponge species Geodia barretti, provide three-dimensional structure, habitat and significantly contribute to benthic-pelagic coupling and nutrient cycling processes in the deep sea. It is unknown if G. barretti remains physiologically functional under the future physicochemical properties of an Anthropocene ocean. In this study, individuals of G. barretti collected from 300 m water depth in the Barents Sea, were exposed to four treatments resembling future ocean conditions (no treatment, 4 {degrees}C increase in seawater temperature, decrease of seawater pH by 0.3, and a combination of the high temperature, low pH). Over the course of 39 weeks, oxygen consumption, dissolved inorganic nutrient fluxes, and bacterioplankton clearance rates were measured as indicators of metabolic activity. We found that all indicators within each sponge individual and per treatment were highly variable over time and no effect of manipulated seawater treatments on these parameters could be demonstrated. Oxygen consumption rates in all groups closely followed a seasonal pattern, potentially caused by (a)biotic cues in the seawater flowing through the experimental aquaria. While similar metabolic rates across all treatments suggest that G. barretti physiologically coped with simulated future ocean conditions, observed tissue necrosis in experimental animals might indicate that the response of the complex, high microbial G. barretti sponge (i.e., sponge host and microbial symbionts) to future ocean conditions may not be reflected in basic physiological processes.

physiology↗

High resolution species detection: accurate long read eDNA metabarcoding of North Sea fish using Oxford Nanopore sequencing

To monitor the effect of nature restoration projects in North Sea ecosystems, accurate and intensive biodiversity assessments are vital. DNA based techniques and especially environmental DNA (eDNA) metabarcoding is becoming a powerful monitoring tool. However, current approaches are based on genetic target regions <500 nucleotides, which offer limited taxonomic resolution. We developed a method for eDNA metabarcoding, based on nanopore sequencing of a longer amplicon, enabling improved identification of fish species. We designed a universal primer pair targeting a 2kb region of fish mitochondria, and compared it to the commonly used MiFish primer pair that targets only [~]170bp. In sillico and mock community testing showed that the 2kb fragments improved the accurate identification of genetically closely related species. eDNA was amplified, and sequenced using the Oxford Nanopore MinION in combination with the sequence read processing pipeline Decona. Analyzing eDNA from a North Sea aquarium showed that sequences from both primer pairs could be assigned to most species, but both approaches also identified unique species in the aquarium eDNA. Next, both primer pairs were used on multiple eDNA samples from the North Sea. Here, similar location specific fish communities were obtained from both approaches. More species were identified through the MiFish approach in the field samples. Interestingly, this difference was not observed in the aquarium, suggesting that 2kb fragment based metabarcoding potentially detects more recent occurrences of animals. This new method has the potential to improve and expand the molecular toolbox for eDNA based monitoring approaches.

molecular biology↗

Ostrea edulis at shipwrecks in the Dutch North Sea

During diving expeditions in July and September 2019 two live European flat oysters (Ostrea edulis) were observed by SCUBA divers. The first oyster was found lying amongst coarse shelly material in the scour hole around shipwreck #3251, 37 nautical miles north west of Texel (NL). The second oyster was found on the Gustav Nachtigal wreck, 6 nautical miles north of Schiermonnikoog (NL). Additional shipwrecks were also inspected for O. edulis individuals but no live specimens were observed, although on 9 out of 11 inspected locations empty, fossil O. edulis shells were found. The September dive on the #3251 shipwreck revealed the presence of several large empty flat oyster shells, some of which were attached to each other, with up to three individuals in a cluster. This implies that the area around the #3251 shipwreck was a suitable location for flat oysters in the past and that oyster larvae are still capable of reaching the location. The findings suggest that shipwrecks and their surroundings are promising locations for future O. edulis restoration projects.

ecology↗