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Biology subjects

Wu, P.-C.

Publications and source records attributed to Wu, P.-C..

4 recordsLinked to original sources

Dynamic Regulation of Atg4 Protease and Autophagy by Dithiothreitol and Iron in Alternaria alternata

Autophagy is a critical cellular process regulated by Atg proteins, yet its modulation by redox-active compounds and iron remains incompletely understood. Here, we investigated the effects of dithiothreitol (DTT) and iron on autophagy and on AaAtg4 protease activity in the plant-pathogenic fungus Alternaria alternata. Using GFP-tagged AaAtg8, fluorescence microscopy and proteolysis assays revealed that DTT markedly enhanced autophagic vacuole formation and GFP release, indicating increased autophagic flux. Western blot analyses confirmed that DTT promoted AaAtg8 lipidation, while co-treatment with hydrogen peroxide (H2O2) suppressed this modification. AaAtg4 was constitutively active and could process AaAtg8 regardless of DTT supplementation, whereas moderate DTT concentrations elevated AaAtg4 protein abundance and phosphorylation. Bimolecular fluorescence complementation assays demonstrated that DTT, but not iron, facilitated AaAtg4-AaAtg8 interactions and vacuolar localization, whereas H2O2 counteracted these effects. Notably, combined DTT and H2O2 sustained autophagy at a low but stable level, suggesting a redox balance in autophagic regulation. Iron supplementation selectively destabilized AaAtg8 and modulated AaAtg4 phosphorylation in a concentration-dependent manner, without altering autophagy or protease activity. Collectively, these findings demonstrate that DTT enhances autophagy primarily by promoting AaAtg8 lipidation, AaAtg4 phosphorylation, and AaAtg4-AaAtg8 complex formation, while exerting minimal influence on AaAtg4 protease activity. In contrast, ion regulates autophagy flux through its effects on AaAtg4 phosphorylation and AaAtg8 stability, without significantly altering AaAtg4 protease activity, AaAtg8 lipidation, or AaAtg4-AaAtg8 interactions. Together, this work underscores the intricate interplay between redox signaling, nutrient cues, and autophagy regulation in A. alternata. IMPORTANCEThis study provides critical new insights into how redox-active compounds and iron modulate autophagy in the plant-pathogenic fungus Alternaria alternata, a pathogen of agricultural relevance. By dissecting the distinct roles of DTT, hydrogen peroxide, and iron in regulating AaAtg8 lipidation, AaAtg4 phosphorylation, and AaAtg4-AaAtg8 interactions, our findings reveal that autophagy is not simply a constitutive process but is finely tuned by redox balance and nutrient cues. This work advances the fundamental understanding of autophagy regulation in filamentous fungi, highlights the interplay between oxidative stress and protease activity, and establishes a framework for exploring how environmental factors shape fungal pathogenicity. Ultimately, these insights may inform novel strategies to mitigate crop fungal diseases by targeting autophagic pathways.

microbiology↗

Rpl13a snoRNAs Downregulate Smooth Muscle Cell COX4I2 and Promote Neointimal Hyperplasia

BACKGROUNDReactive oxygen species (ROS) augment the activation of vascular smooth muscle cells (SMCs) and promote neointimal hyperplasia evoked by arterial injury or atherogenesis. We have previously shown that small nucleolar RNAs (snoRNAs) from the Rpl13a locus are key regulators of cellular ROS levels. METHODSUsing mice deficient in the Rpl13a snoRNAs, we tested whether these snoRNAs regulate SMC activation in vitro and in vivo. Carotid endothelial denudation was used to provoke neointimal hyperplasia in wild-type (WT) and snoRNA knockout (snoKO) mice, which lack all four intronically-encoded Rpl13a snoRNAs. Primary SMCs from WT and snoKO mice were used for in vitro functional and proteomic analyses. HEK293T cells with specific snoRNA deletions were used to test for snoRNA-guided 2-O-methylation of mRNA. RESULTSArterial ROS levels, inflammation, and carotid artery neointimal hyperplasia were reduced in snoKO compared with WT mice. In vitro, snoKO SMCs demonstrated lower ROS levels and less migration, proliferation, and inflammatory signaling than WT SMCs. Reduced ROS levels in snoKO SMCs and aortas correlated with upregulation of the mitochondrial protein COX4I2, which is associated with reduced mitochondrial ROS under normoxic conditions. Deleting the snoRNA U32A in human HEK293T cells decreased 2-O-methylation of COX4I2 mRNA and upregulated COX4I2 protein without changing COX4I2 mRNA levels. Silencing Cox4i2 in snoKO SMCs upregulated SMC ROS to WT levels. CONCLUSIONSRpl13a snoRNAs are important drivers of SMC activation and neointimal hyperplasia. Rpl13a snoRNAs augment SMC ROS levels, at least in part, by post-transcriptional downregulation of COX4I2 expression.

molecular biology↗

The packaging signal of Xanthomonas integrative filamentous phages

Unlike Ff, the packaging signal (PS) and the mechanism of integrative filamentous phage assembly remain largely unknown. Here we revived two Inoviridae prophage sequences, {phi}Lf2 and {phi}Lf-UK, as infectious virions lysogenize black rot pathogen Xanthomonas campestris pv. campestris. {phi}Lf2 and {phi}Lf-UK genomes consist of 6,363 and 6,062 nucleotides and share 85.8% and 98.7% identity with {phi}Lf, respectively. To explore their assembly, we first identified 20-26- nucleotide long PS sequences of 10 Xanthomonas phages. These PS consist of a DNA hairpin with the consensus GGX(A/-)CCG(C/T)G sequence in the stem and C/T nucleotides in the loop, both of which are conserved and essential for PS activity. In contrast to Ff, the 5 to 3 orientation of PS sequence is not conserved or critical for their competence. This is the first report to offer insights into the structure and function of integrative phage PS, revealing the diversity of filamentous phage encapsidation.

molecular biology↗

The efficient induction of human retinal ganglion-like cells provides a platform for studying optic neuropathies

Retinal ganglion cells (RGCs) are essential for vision perception. In glaucoma and other optic neuropathies, RGCs and their optic axons undergo degenerative change and cell death; this can result in irreversible vision loss. Here we developed a rapid protocol for directly inducing RGC differentiation from human induced pluripotent stem cells (iPSCs) by the overexpression of ATOH7, BRN3B and SOX4. The hiPSC-derived RGC-like cells (iRGCs) show robust expression of various RGC-specific markers by whole transcriptome profiling. A functional assessment was also carried out and this demonstrated that these iRGCs display stimulus-induced neuronal activity, as well as spontaneous neuronal activity. Ethambutol (EMB), an effective first-line anti-tuberculosis agent, is known to cause serious visual impairment and irreversible vision loss due to the RGC degeneration in a significant number of treated patients. Using our iRGCs, EMB was found to induce significant dose-dependent and time-dependent increases in cell death and neurite degeneration. Western blot analysis revealed that the expression levels of p62 and LC3-II were upregulated, and further investigations revealed that EMB caused a blockade of lysosome-autophagosome fusion; this indicates that impairment of autophagic flux is one of the adverse effects of that EMB has on iRGCs. In addition, EMB was found to elevate intracellular reactive oxygen species (ROS) levels increasing apoptotic cell death. This could be partially rescued by the co-treatment with the ROS scavenger NAC. Taken together, our findings suggest that this iRGC model, which achieves both high yield and high purity, is suitable for investigating optic neuropathies, as well as being useful when searching for potential drugs for therapeutic treatment and/or disease prevention.

cell biology↗