Biology subjects

Wrobel, B.

Publications and source records attributed to Wrobel, B..

3 recordsLinked to original sources

bioRxiv2026

How long is the brain perfusable after global ischemia? A systematic review

BackgroundGlobal cerebral ischemia initiates a cascade of pathophysiological changes that progressively impair subsequent perfusion of brain tissue. Some authors have proposed that adequate cerebral perfusion becomes impossible after approximately 10-30 minutes of global ischemia. However, the extant evidence base for this threshold and its variation across studies have not yet been systematically examined. ObjectiveTo synthesize the literature on post-ischemic cerebral perfusion success as a function of ischemia duration. MethodsWe searched PubMed (February 11, 2026) for studies of global cerebral ischemia in animal or human models that reported quantitative or categorical measures of perfusion quality. Eligible studies included those assessing perfusion via restoration of blood flow, via external perfusion of non-blood solutions, and/or via tracer injection following reperfusion. Studies of focal ischemia were excluded. Data extracted included species, ischemia duration, temperature during ischemia, ischemia model, perfusate type, and perfusion quality assessment method. The perfusion quality outcome was operationalized as either the average percentage of brain tissue perfused or the percentage of brains in a group that were adequately perfused. Study quality was assessed using a custom domain-specific checklist. The review protocol was preregistered on the Open Science Framework (https://osf.io/2qm3w). ResultsWe included 60 studies with 192 study arms reporting on the perfusion of the brains of rabbits, rats, pigs, dogs, cats, and humans. Studies differed in the model of ischemia, the perfusate, the perfusion parameters, the quality assessment methods, and other factors. Longer ischemia was associated with lower perfusion quality, but the relationship appeared to be a gradual decline rather than a sharp threshold. Additionally, the variability across studies was large, and some studies have found that at least partial perfusion is possible after longer periods. Within-study dose-response curves were more consistent than the pooled cross-study pattern. ConclusionsHow long the brain remains perfusable after circulatory arrest has not yet been definitively established. On average, perfusion quality clearly declines rapidly as the duration of global cerebral ischemia increases. However, some studies, often using interventions such as hypothermia or vasopressors, have reported at least partial perfusion of the brain even after 30 or 60 minutes of ischemia. Moreover, at least partial perfusion has been reported in human brain banking studies after postmortem intervals of several hours or days in some donors. Limitations of this review include substantial heterogeneity in study methods and outcome measures, which precluded formal meta-analysis. Future research may benefit from more thorough and precise measures of perfusion quality.

neuroscience↗

bioRxiv2026

Ultrastructural preservation of a whole large mammal brain with a protocol compatible with human physician-assisted death

Building a high-fidelity computational model of the whole human brain will require preservation of the ultrastructure at the level of the entire organ, post-mortem. For such a model to reflect as closely as possible the brain in the living state, artifacts that arise during both the agonal phase and the postmortem interval will need to be minimized. This is potentially feasible if a terminally-ill patient donates their brain for research following physician-assisted death. In this paper, we modify a protocol for aldehyde-stabilized cryopreservation to make it compatible with physician-assisted death. We use pigs as a model, which resemble humans in cardiovascular and brain anatomy. Aldehyde-stabilized cryopreservation was designed to provide superior structural preservation of brains of any size, across all anatomical scales, compatible with diverse analytical assays and long-term storage without ultrastructural degradation. We demonstrate, with light microscopy and volume electron microscopy, that our brain preservation protocol results in connectomically traceable whole brains and propose an economically feasible storage modality that is expected to maintain stability of ultrastructure and macromolecules in the brain even for thousands of years. Most importantly, we establish that 14 min is the approximate length of the perfusability window--the time after the cardiac arrest during which blood washout needs to be initiated so that the brain ultrastructure is preserved.

neuroscience↗

bioRxiv2023

Autapses enable temporal pattern recognition in spiking neural networks

Most sensory stimuli are temporal in structure. How action potentials encode the information incoming from sensory stimuli remains one of the central research questions in neuroscience. Although there is evidence that the precise timing of spikes represents information in spiking neuronal networks, information processing in spiking networks is still not fully understood. One feasible way to understand the working mechanism of a spiking network is to associate the structural connectivity of the network with the corresponding functional behaviour. This work demonstrates the structure-function mapping of spiking networks evolved (or handcrafted) for a temporal pattern recognition task. The task is to recognise a specific order of the input signals so that the Out put neurone of the network spikes only for the correct placement and remains silent for all others. The minimal networks obtained for this task revealed the twofold importance of autapses in recognition; first, autapses simplify the switching among different network states. Second, autapses enable a network to maintain a network state, a form of memory. To show that the recognition task is accomplished by transitions between network states, we map the network states of a functional spiking neural network (SNN) onto the states of a finite-state transducer (FST, a formal model of computation that generates output symbols, here: spikes or no spikes at specific times, in response to input, here: a series of input signals). Finally, based on our understanding, we define rules for constructing the topology of a network handcrafted for recognising a subsequence of signals (pattern) in a particular order. The analysis of minimal networks recognising patterns of different lengths (two to six) revealed a positive correlation between the pattern length and the number of autaptic connections in the network. Furthermore, in agreement with the behaviour of neurones in the network, we were able to associate specific functional roles of locking, switching, and accepting to neurones.

neuroscience↗